G497200


Basic Information

Item Value
gene id G497200
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18528327 ~ 18530628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU570263
TTTAGTATGAACGTTAGTTTATTTCAACACTTGTAAACAGCTTTGGCTGTGTTCTGAGAACAAACGATGAACCGAGATCATTCAGAGACATCTCCTTAACTCTAAAACAAACTCGACATTTAATTCATTGCTAAACATTTTCAACCTTTTCACCAAGTTTCTGCTTTTGTGATTTAATACCAAATATGCCTGTAACAAACATTTACATTCAATATAAATAAGTTGTTAAATGCAGTCATGTTTTATTTTAGTTCGTCATAATATTCCAGAGATGAAAACTGAAGTAAACCCCAAAAATAAAACAGAAGCTCTTCAATCCAAATTTCAATTGAGAAGGAAACTAAAACACAAGGTTTCTGTGCTGAAGCAATAACACACATCCACAAACATAACTACCATCTTCATGTTTTTTTTTTTACATAATTACATCTGCATTCCTGAAGAAGTTCTGGACTGATATTCATCTGCACATTGGTACCGTTTTCCCGCCATTGACAAAGATGATGCTGGAGTTGTGAATTGTGGATGCACGTATTGCATGAAATTACATAAACCTACAAAATATAAATAAATAAATAGAATGTATTTCACCCTCCTCAAATCAAACACTGCAGAACGCTAGTGTCCAAAGGCACATTTCTATGGAAGCTTGTTTCCACCAAACAATAAAAAAGGTAATTACGACTATATCTCACAATTCTGGCTTTTTTTCTCAGAATTGCGAGTTGTGAGTTTATAAATTCAGAATTGCAAGATATGTCAGAATTGTGTGATATATAGTCGGAATTGCGAGTTAAAAAAGTCAGAATTGTGTCAGAACTGAAAGTTATAAAGTGAGAATTGCAAGATTTTTTTTATTTTTTTTTTTTATTTAGTGGCGGAAACAAGCTTCCATTCATTTCTGATGTTTCCCATCATCACACACATTTTACCCTCCGAGGGTAAAGAACGCCTCACGTCTGGATACAACATCCCAACTGCCTCCTGATCAATTAAAGTCAAAGCACATGTTCACTACAGAGGGAAGGAGGTCATTAGCAGTCCATGGAACATTCTAGAGTCACTTGATGATAATCATTCTATTCTCTGTAGTTTTATATGTCATTTAGTGCTCCTTTGTTTTCTAAGGAGGCGCGATCTGAAGAATCCAACATCTGAGATGGTCCTCCGAAATCTAGTTTGTTCCCTTCCTTGATGCTAAGTGTTAACAGTATAATATAATAATAAAATAAGTTATAATATTACTAACTAATTTTCAAGTGTGTAAGTGCTGGTGAAGCAATGCTAGCCAGCGTCGAACAGCTGCATTCATGTAACAGAGCTAAACGTGGCGAATGGATCATGGCATACGTTCCGTCTGAGCATCGATCTGTTCGCGCTGTGTAAATGTCCCGTTATACTGATTCATTAAAACTACTTTTGAGAGTTCATCATGGATGAGCGCTCAACTCTTCCCCTTCGTTGTCTTCTTGTTGTGCGTCAACAGCGGTCGATGTCGAAACCCCGGACCGTCTCTCTCTGCCGCTCGACGTCCCGACAGTCTCTAATGTAGAGGCTTGAATGCGTAGGACGCAGAGAATGAATTTCCACGACTGGAAAAAAGACACATAGAGAAGAGCAGCGACAGAGAGGAAGGCCGTGCGCTGGCTCTCATTTCTCGGTGACGGCTGCGGCCATGGGCGTCCGCATGGTTCCTCTCGCTGTGATGGTCAGCTCCTCGATCTCTGTGTTCAGACGTCTGATCACCCACTCCATCGCCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU570263 True 1762 lncRNA 0.39 2 18528327 18530628

Neighbor

gene id symbol gene type direction distance location
CI01000340_18485385_18491222 NA coding downstream 36734 18484847 ~ 18491593 (-)
CI01000340_18482872_18484601 NA coding downstream 43272 18481349 ~ 18485055 (-)
CI01000340_18419431_18419838 NA coding downstream 107126 18419058 ~ 18421201 (-)
CI01000340_18408556_18408855 NA coding downstream 119472 18408522 ~ 18408855 (-)
CI01000340_18302048_18303998 NA coding downstream 224279 18301388 ~ 18304048 (-)
CI01000340_18540426_18543271 SLC32A1.S, SLC32A1, VIAAT coding upstream 9633 18540261 ~ 18544300 (-)
CI01000340_18572454_18585230 NA coding upstream 41826 18572454 ~ 18585230 (-)
CI01000340_18587476_18607063 NA coding upstream 56702 18587330 ~ 18607133 (-)
CI01000340_18654497_18656059 NA coding upstream 123822 18654450 ~ 18656059 (-)
CI01000340_18706881_18719031 NA coding upstream 175443 18706071 ~ 18719031 (-)
G497177 NA non-coding downstream 109297 18418753 ~ 18419030 (-)
G497173 NA non-coding downstream 113620 18414473 ~ 18414707 (-)
G497171 NA non-coding downstream 116755 18411280 ~ 18411572 (-)
G497130 NA non-coding downstream 176523 18298469 ~ 18351804 (-)
G497209 NA non-coding upstream 16324 18546952 ~ 18547397 (-)
G497251 NA non-coding upstream 114869 18645497 ~ 18646467 (-)
G497252 NA non-coding upstream 117154 18647782 ~ 18712131 (-)
G497229 NA non-coding upstream 138584 18669212 ~ 18670303 (-)
G496853 NA other downstream 1285588 17177492 ~ 17242739 (-)
G496845 NA other downstream 1482639 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 2008353 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 2348242 16171677 ~ 16178314 (-)
G497442 NA other upstream 628241 19158869 ~ 19166778 (-)

Expression


Co-expression Network