G497442


Basic Information

Item Value
gene id G497442
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19158869 ~ 19166778 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU570552
GTATTACCATGGTAAATGTCTGATGAATCTACAACCATGTTACTTTAAGGTCTAAGAGAGAAATAAGGTGTATGTTCTCACCGTTACGCCAGTGGTTAAGCTCCGCCTCCAGTCTCTGGATGTTCTCTTTCAGGTTCTTGTTCTTCTCCTTCTCTTTCTCGTATTTCCTCTTCCACTGCTCCGCTGTCAGCTCCAGGTTCACAGACGCCGTGTTCTTTATGGTCTTTGCTCGTTGTCCGAACATCAGGGTGGATTTGGTCTCGGCATCATTGAAGGCTGAAGGCGAGCAGCAGATGAACATGGTGGTTCTGCAGTTTCCGCCCAGAGAGTCCTGCAGGATCCGCGTCATCTTACTGTCCCGGTACGGCACGTGAGTCTTGGTGCCTTCGGCCAGAGCTGATATAACGTTTCCCAGCGCCGACAGAGACTTGTTGATGTTCTTGGCTTCATCCAGAATGGCTCCCTCCGCACCTGTCTTACTCACCTTCTCGCTCCCGGCCAGATCCACCAGGTAGAGTTTTCCACAGAGCTTCTGCTCCGTCTCCACGTGCTCCTGTTTGATGCTGATGAGGAATATGCTGTGACTCCTGGAGCTGTGTTCATTCATATTTGTAACAGCGACGTGACGGTTCGCTTTTCCCTCGTCAATAACATCCATCACTTCATCCGGGCTGGAAACAAAACGTTCAGTACAGCCCTTCACATAGGGAACTCGGTTCTTGTCTTCATGAACGGACAGGTTTGTCTTACTCACATCAAGTAGGTCACGAATCTTATCCATGTAGATTTCAAAGTAGGAAACCTTAATGTGGAACTCCAGGTTTTCATCCATGATGTAAATGTGGTTGAAAATGTCTTCAGCAATCCTCGGGATAATTCCCCTTCCATTAGGATCATGCAGTTTTCCCTCCATGGTGTAGGTTTTTCCAGAAGATGTCTGTCCGTATGCAAAGATGGTGCCGTTGTAGCCGTCCAGAACATCTTTAACAATCTGTTTGGCACAGCTGTTGTACACCTGCTCCTGTGTGCAGTTCGTGG
>TU570549
GTTTTCTGCGCCAGCTCCTCGGTCAGTCGTCTGTTATGAAGGCTCTTGTCTTCGGCTTCCTGACTCTTCTGGTCGTAGTTCAGAGCGAGTTCCTCCAGTGCCTGCAGAACCTCCTTCACCTCGGCCTTCGCGCTGTCGCTCTCCGTCTGCAGACGACTCAACTCGCTCGTCACACGCTCACCGTCTCCACGCGACGACGCCAGCAGCTCTTCTTGATCCAGCATTTGCTCCTTCAGTTTCTCCACCAGCTGACACTGTAAATTAATCTCATCATCCTTGTCGTCCAGTTGTTTGTAGAGTTTGCGGATCTCTTCCTCATATTTGCGCTGGTGTTCCTCTGGGATTGGCACACACACACTCGGACTCTGATTGTCTAAAGCAGCGTCTTCACTGACATCAGATTCCACAGGAATCACAGCCATCAGATCCAGCGGAGCCACTGATTCACCTACACCATCATTTACTGTTACGTTACGCCAGTGGTTAAGCTCCGCCTCCAGTCTCTGGATGTTCTCTTTCAGGTTCTTGTTCTTCTCCTTCTCTTTCTCGTATTTCCTCTTCCACTGCTCCGCTGTCAGCTCCAGGTTCACAGACGCCGTGTTCTTTATGGTCTTTGCTCGTTGTCCGAACATCAGGGTGGATTTGGTCTCGGCATCATTGAAGGCTGAAGGCGAGCAGCAGATGAACATGGTGGTTCTGCAGTTTCCGCCCAGAGAGTCCTGCAGGATCCGCGTCATCTTACTGTCCCGTTGTATATGCAGATGCTGCTGTGACTCACGGTGCCTTCGGCCAGAGCTGATATAACGTTTCCCAGCGCCGACAGAGACTTGTTGATGTTCTTGGCTTCATCCAGAATGGCTCCCTCCGCACCTGTCTTACTCACCTTCTCGCTCCCGGCCAGATCCACCAGGTAGAGTTTTCCACAGAGCTTCTGCTCCGTCTCCACGTGCTCCTGTTTGATGCTGATGAGGAATATGCTGTGACTCCTGGAGCTGTGTTCATTCATATCTGACACACGACATCACAGCAGTCAGATCAGCACCACAGGTATTTTCCCAGATTGCTCAGTGACTCAGCAATCACAGCGGAATACAGATGAGCAGCGGCGGCGTTCCTCCAATCAGAATGCAGCAGCTGTGACTAAAACGACACAGATGGACGTGTGTATGTGTTCACACACTCTCATCTGAAGCTCACATGCTGAAATATGAGGTCTCAGCTGGTTTGACACTGTT
>TU570551
GTTTTCTGCGCCAGCTCCTCGGTCAGTCGTCTGTTATGAAGGCTCTTGTCTTCGGCTTCCTGACTCTTCTGGTCGTAGTTCAGAGCGAGTTCCTCCAGTGCCTGCAGAACCTCCTTCACCTCGGCCTTCGCGCTGTCGCTCTCCGTCTGCAGACGACTCAACTCGCTCGTCACACGCTCACCGTCTCCACGCGACGACGCCAGCAGCTCTTCTTGATCCAGCATTTGCTCCTTCAGTTTCTCCACCAGCTGACACTGTAAATTAATCTCATCATCCTTGTCGTCCAGTTGTTTGTAGAGTTTGCGGATCTCTTCCTCATATTTGCGCTGGTGTTCCTCTGGGATTGGCACACACACACTCGGACTCTGATTGTCTAAAGCAGCGTCTTCACTGACATCAGATTCCACAGGAATCACAGCCATCAGATCCAGCGGAGCCACTGATTCACCTACACCATCATTTACTGTTACTATAGTAAATATTAATGCAGTTTTTAGGGTTCTCCTCTTTTAGAAATCATGTATTGTAAATTTAGTCGAATTACCTTGTTTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU570552 False 1038 TUCP 0.48 10 19158869 19164472
TU570549 False 1235 lncRNA 0.52 8 19160236 19166778
TU570551 True 555 lncRNA 0.48 3 19165863 19166778

Neighbor

gene id symbol gene type direction distance location
CI01000340_19142339_19149140 DCTN2 coding downstream 11096 19141886 ~ 19149140 (-)
CI01000340_19115929_19119348 DDIT3 coding downstream 40888 19115605 ~ 19119348 (-)
CI01000340_19062314_19072746 NA coding downstream 87490 19061085 ~ 19072746 (-)
CI01000340_18900583_18906154 NA coding downstream 254082 18899677 ~ 18906154 (-)
CI01000340_18871236_18880189 STAC3 coding downstream 280047 18870944 ~ 18880189 (-)
CI01000340_19194730_19198554 IGSF8 coding upstream 26587 19193365 ~ 19198554 (-)
CI01000340_19213032_19215967 SP7 coding upstream 45583 19212361 ~ 19216620 (-)
CI01000340_19231651_19244239 HELZ2 coding upstream 64113 19230891 ~ 19244964 (-)
CI01000340_19247600_19253297 STMN3 coding upstream 80695 19247473 ~ 19253297 (-)
CI01000340_19254583_19259959 ARFRP1, ARFRP1.L, ARFRP coding upstream 87448 19254226 ~ 19259959 (-)
G497440 NA non-coding downstream 4979 19154833 ~ 19155257 (-)
G497393 NA non-coding downstream 72608 19086428 ~ 19087628 (-)
G497288 NA non-coding downstream 193726 18915346 ~ 18966510 (-)
G497271 NA non-coding downstream 338367 18733663 ~ 18821869 (-)
G497279 NA non-coding downstream 411495 18745522 ~ 18748741 (-)
G497444 NA non-coding upstream 1297 19168075 ~ 19168375 (-)
G497343 NA non-coding upstream 139465 19306243 ~ 19363326 (-)
G497375 NA non-coding upstream 248675 19415453 ~ 19420039 (-)
G497341 NA non-coding upstream 262583 19429361 ~ 19431737 (-)
G497350 NA non-coding upstream 281661 19448439 ~ 19451285 (-)
CI01000340_18419431_18419838 NA other downstream 705556 18419058 ~ 18421201 (-)
G496853 NA other downstream 1917497 17177492 ~ 17242739 (-)
G496845 NA other downstream 2114548 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 2640262 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 2980151 16171677 ~ 16178314 (-)

Expression


Co-expression Network