G497480


Basic Information

Item Value
gene id G497480
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19542807 ~ 19543826 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU570595
AGACACACTCCACACGAACGCCCGGTCATCCTCTCCACCAGTAACAGCCAGACTGTTGGTCACTGGGTCCAAACTAACGCAAAAGACAGAACCCGTGTGTTTGGAGAAAGTGAGTTCACTGTCGTCCTGCTCAGACTCCATCTCATCCTCCGTCTCCCATCCATCATCATCTGCATTTCCAGCATCTGCAAAATCTACATCCTCAAGCTCCTCCGCCAGATCCTCTGCGGTCTGTTCTGTATCATTGAGGTCAATAACCTCGATGATTTCTTCATCTTGGTGCAGTTGCAGTGAATCTTCCTCAGGATTGTCCATCATCAGTTTATTTATTAATTTAATTTATTCATTACAGTCCTGTTAAAGTTTTATCACGAGCTCTTTCCGCTTCAGCTCAACTTCTATGTTCTAACCCTTATTCGCGATATTATTTTGAACTAAATCACAGTCCTATGACAAGATTTCGTCAAATTCAATGTTTCCTGAATAATAAACCTACTGTTGATCGTTTTTGGTGTGCTCGTATATTTCACGTGCTCACCCGGACAGCTCGCGCTGACGTACGACGTGAAGAACATGCTGACGGACGGCGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU570595 True 591 lncRNA 0.45 3 19542807 19543826

Neighbor

gene id symbol gene type direction distance location
CI01000340_19512374_19526344 NA coding downstream 16463 19510521 ~ 19526344 (-)
CI01000340_19456344_19458688 NA coding downstream 84119 19456031 ~ 19458688 (-)
CI01000340_19382181_19383365 NA coding downstream 159353 19381972 ~ 19383454 (-)
CI01000340_19346357_19355278 NA coding downstream 187529 19345904 ~ 19355278 (-)
CI01000340_19335733_19340791 NA coding downstream 202016 19335654 ~ 19340791 (-)
G497351 NA non-coding downstream 48326 19491924 ~ 19494481 (-)
G497350 NA non-coding downstream 91522 19448439 ~ 19451285 (-)
G497341 NA non-coding downstream 111070 19429361 ~ 19431737 (-)
G497375 NA non-coding downstream 122768 19415453 ~ 19420039 (-)
G497343 NA non-coding downstream 179481 19306243 ~ 19363326 (-)
G497442 NA other downstream 378335 19158869 ~ 19166778 (-)
CI01000340_18419431_18419838 NA other downstream 1088127 18419058 ~ 18421201 (-)
G496853 NA other downstream 2300068 17177492 ~ 17242739 (-)
G496845 NA other downstream 2497119 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 3022833 16514899 ~ 16518531 (-)

Expression


Co-expression Network