XLOC_013776 (btr24)


Basic Information

Item Value
gene id XLOC_013776
gene name btr24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4051535 ~ 4057870 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027564
AGTTGTAACGTTCTTTTTACTTTCTTGGATCTAAAGAGGTTATATTTCAGATTGTTCACCGAGTCTTTTACTAAGACTGTGTTTGAAAGGagcatttgtgtaaaaaaaaaattgtaatcccGTGGCCCATCAGTGAAAAGGACTGTAGAGATGAAGAACAATGGCAGAATCTTCACCAACATCAACAAAAGGAAAAGTAACCAGGAGAGGAAGTCTAGAAGGTTTACCTCCATTGATGTCCTCCACCAGTTTTCCACTGTCTGAGGAGCTTCAGTGCTCAATATGTCTGGATGTGTTCACTGATCCGGTCAGCACTCCATGTGGACACAACTTCTGCAAGAGCTGTCTGAATACATGCTGGAACAACAGCCAGACCTGCAGCTGTCCATACTGTAATGAAACATTCACACAAAGACCTGATCTCAAGATTAACACAACACTCAGAGAGATCTCAGAGCACTATAAGGAGAAAAATCCTGCAAAAAAGCCAAGAATTATGTGTGAAATCTGTGAGGGCAGAAAGCTGAAAGCCCTGAAGTCGTGTCTGGTGTGTCAGAGCTCTTACTGTCAAACTCACCTGGAGCCTCATTTGAGAGTGGCAGGATTAAAGAAACACAAACTGATGGATCCTGTGAGGAATCTGGAGGactatatatgtcagaaacacgACAGACCTCTGGAGCTCTTCTGTAGAGATGATCAGACGTGTGTGTGTTCATTCTGTATTGAGAAAGATCATGAAAACCACAACACTGTTCCTCTAGAAGAGGAGAGTAAAGAGAAGAAGACTGAACTGATAAAGACACAAACAGATGTGCAGCAGATGATCCAGGACAGAATCAAGAAGATTCAAGAAGTCAAACACTCAGCAGGAGTCAGAAAAATATACTCAGAGAAGGAGAAAGAGGATCATGTGGAGATCTTAACTGATCTGATCCGCTCCATTGAGAGATGTCACACTAAACTGCTGAAGATGATGGAGGAGCAGCAGAAACCAGCAGAGAAACAGGAGGAAGAGCTGATTGAAGAGCTGGAGCTGGAGATCACTGAGCTGAAGATGAGAAACACTGAGCTGGAGCAGCTCTCACACACTGAAGATCACCTCCACCTCCTACAGAGTTACTCATCCCTGCACAGACCTACAGACACCAGGAACTGGCCTGAGATCAGTCTGAAGACTCTGGAGAATCTGGAGACTCTGAGAAAAACTTTAGATCACCTGAAGGACACAGTAGAGGAGAAACTCAGTCAAACTGAGTTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCAGATCTCATCCTGTCTGATGATGGAAAACGAGTGAGAGATGGAGACATCAGACAGAAACTCCCAGACAAACCACAGAGATTTGATTACTGTGTCTGTGTCCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTATTTTGAGGTGCAGGTGAAGGGAAAGACTGACTGGGATTTAGGAGTGGTCAGAGAATCCATTAACAGGAAGGGACAGATCACAGCGAGTGCCAGTAAAGGATTCTGGACTGTGGTTCTGAGGAATGGGATTGAATATAAAGCCTGTGCTAGTCCTCCTGTCTCTCTGCCTGTGAAAGTGAAGCCGCAGCGGGTCGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCTTATTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTAGTCAGACTTTCACTGATAAACTCCACCCATTGTTTAGCCCATGTCCAAACTGTGCAGGTAAAAACTCAAACCCACTGATCATCACACCTGTCTAATATTTGAAATGAATAACCCTAATTctaaatattacatattattatataattgtttattattaaagctCCTGCAACTGAAAGgcagaacattttcatttttttaaagcataaatttTGTGTTGAAATCCTAAAATGTAAAATCTGAaactgtttgattttgttttctctCGTCTCCTCCTGCAAAGTAACACTGATAATATTTTCATCTGAATAAACAATAAAGAATGTTCACTGACAAA
>TCONS_00027565
ATGGCAGAATCTTCACCAACATCAACAAAAGGAAAAGTAACCAGGAGAGGAAGTCTAGAAGGTTTACCTCCATTGATGTCCTCCACCAGTTTTCCACTGTCTGAGGAGCTTCAGTGCTCAATATGTCTGGATGTGTTCACTGATCCGGTCAGCACTCCATGTGGACACAACTTCTGCAAGAGCTGTCTGAATACATGCTGGAACAACAGCCAGACCTGCAGCTGTCCATACTGTAATGAAACATTCACACAAAGACCTGATCTCAAGATTAACACAACACTCAGAGAGATCTCAGAGCACTATAAGGAGAAAAATCCTGCAAAAAAGCCAAGAATTATGTGTGAAATCTGTGAGGGCAGAAAGCTGAAAGCCCTGAAGTCGTGTCTGGTGTGTCAGAGCTCTTACTGTCAAACTCACCTGGAGCCTCATTTGAGAGTGGCAGGATTAAAGAAACACAAACTGATGGATCCTGTGAGGAATCTGGAGGactatatatgtcagaaacacgACAGACCTCTGGAGCTCTTCTGTAGAGATGATCAGACGTGTGTGTGTTCATTCTGTATTGAGAAAGATCATGAAAACCACAACACTGTTCCTCTAGAAGAGGAGAGTAAAGAGAAGAAGACTGAACTGATAAAGACACAAACAGATGTGCAGCAGATGATCCAGGACAGAATCAAGAAGATTCAAGAAGTCAAACACTCAGCAGGAGTCAGAAAAATATACTCAGAGAAGGAGAAAGAGGATCATGTGGAGATCTTAACTGATCTGATCCGCTCCATTGAGAGATGTCACACTAAACTGCTGAAGATGATGGAGGAGCAGCAGAAACCAGCAGAGAAACAGGAGGAAGAGCTGATTGAAGAGCTGGAGCTGGAGATCACTGAGCTGAAGATGAGAAACACTGAGCTGGAGCAGCTCTCACACACTGAAGATCACCTCCACCTCCTACAGAGTTACTCATCCCTGCACAGACCTACAGACACCAGGAACTGGCCTGAGATCAGTCTGAAGACTCTGGAGAATCTGGAGACTCTGAGAAAAACTTTAGATCACCTGAAGGACACAGTAGAGGAGAAACTCAGTCAAACTGTGTCTGCAGAGTTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCAGATCTCATCCTGTCTGATGATGGAAAACGAGTGAGAGATGGAGACATCAGACAGAAACTCCCAGACAAACCACAGAGATTTGATTACTGTGTCTGTGTCCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTATTTTGAGGTGCAGGTGAAGGGAAAGACTGACTGGGATTTAGGAGTGGTCAGAGAATCCATTAACAGGAAGGGACAGATCACAGCGAGTGCCAGTAAAGGATTCTGGACTGTGGTTCTGAGGAATGGGATTGAATATAAAGCCTGTGCTAGTCCTCCTGTCTCTCTGCCTGTGAAAGTGAAGCCGCAGCGGGTCGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCTTATTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTAGTCAGACTTTCACTGATAAACTCCACCCATTGTTTAGCCCATGTCCAAACTGTGCAGGTAAAAACTCAAACCCACTGATCATCACACCTGTCTAA
>TCONS_00027566
GGATCCTGTGAGGAATCTGGAGGactatatatgtcagaaacacgACAGACCTCTGGAGCTCTTCTGTAGAGATGATCAGACGTGTGTGTGTTCATTCTGTATTGAGAAAGATCATGAAAACCACAACACTGTTCCTCTAGAAGAGGAGAGTAAAGAGAAGAAGACTGAACTGATAAAGACACAAACAGATGTGCAGCAGATGATCCAGGACAGAATCAAGAAGATTCAAGAAGTCAAACACTCAGCAGGAGTCAGAAAAATATACTCAGAGAAGGAGAAAGAGGATCATGTGGAGATCTTAACTGATCTGATCCGCTCCATTGAGAGATGTCACACTAAACTGCTGAAGATGATGGAGGAGCAGCAGAAACCAGCAGAGAAACAGGAGGAAGAGCTGATTGAAGAGCTGGAGCTGGAGATCACTGAGCTGAAGATGAGAAACACTGAGCTGGAGCAGCTCTCACACACTGAAGATCACCTCCACCTCCTACAGAGTTACTCATCCCTGCACAGACCTACAGACACCAGGAACTGGCCTGAGATCAGTCTGAAGACTCTGGAGAATCTGGAGACTCTGAGAAAAACTTTAGATCACCTGAAGGACACAGTAGAGGAGAAACTCAGTCAAACTGTGTCTGCAGAGTTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCAGATCTCATCCTGTCTGATGATGGAAAACGAGTGAGAGATGGAGACATCAGACAGAAACTCCCAGACAAACCACAGAGATTTGATTACTGTGTCTGTGTCCTGGG

Function

symbol description
btr24 Predicted to enable zinc ion binding activity. Orthologous to human TRIM60 (tripartite motif containing 60).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-376 Predicted to enable zinc ion binding activity. Orthologous to human TRIM60 (tripartite motif containing 60).

Ensembl:

ensembl_id ENSDARG00000102143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027564 False 2058 mRNA 0.42 7 4051535 4057870
TCONS_00027565 False 1668 mRNA 0.45 7 4051695 4057631
TCONS_00027566 True 807 mRNA 0.46 6 4054036 4057234

Neighbor

gene id symbol gene type direction distance location
XLOC_013775 btr23 coding upstream 4311 4038589 ~ 4047224 (+)
XLOC_013774 meaf6 coding upstream 18504 4024443 ~ 4033031 (+)
XLOC_013773 eva1bb coding upstream 189162 3849378 ~ 3862373 (+)
XLOC_013772 oscp1a coding upstream 204898 3826782 ~ 3846637 (+)
XLOC_013771 NA coding upstream 274693 3763157 ~ 3776842 (+)
XLOC_013777 btr25 coding downstream 1330 4059200 ~ 4071777 (+)
XLOC_013778 zgc:173581 coding downstream 18389 4076259 ~ 4083621 (+)
XLOC_013779 TRAPPC9 coding downstream 81195 4139065 ~ 4341690 (+)
XLOC_013780 trappc9 coding downstream 385415 4443285 ~ 4447733 (+)
XLOC_013781 kcnk9 coding downstream 405519 4463389 ~ 4531049 (+)
XLOC_013768 NA non-coding upstream 262314 3740565 ~ 3789221 (+)
XLOC_013769 NA non-coding upstream 266007 3760176 ~ 3785528 (+)
XLOC_013770 NA non-coding upstream 287865 3760398 ~ 3763670 (+)
XLOC_013765 NA non-coding upstream 472914 3573901 ~ 3578621 (+)
XLOC_013782 dre-mir-30a non-coding downstream 679706 4737576 ~ 4737664 (+)
XLOC_013783 CABZ01063426.1 non-coding downstream 713049 4770919 ~ 4771035 (+)
XLOC_013784 CU652215.1 non-coding downstream 718422 4776292 ~ 4776413 (+)
XLOC_013787 NA non-coding downstream 836367 4894237 ~ 4895341 (+)
XLOC_013788 NA non-coding downstream 854939 4912809 ~ 5163694 (+)

Expression


Co-expression Network