XLOC_013778 (zgc:173581)


Basic Information

Item Value
gene id XLOC_013778
gene name zgc:173581
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4076259 ~ 4083621 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027576
ATGGCAGAATCTTCACCAACATCAACAAAAGGAAAAGAAACCTGGAGAGGAAGTCAAGATGTTTTACCTCCATATATGTCCTCCTCCAGTAATCCACTGTCTGAGGAGCTTCAGTGCTCAATATGTCTGGAGGTGTTCACTGATCCGGTCAGCACTCCATGTGGACACAACTTCTGCAAGAGCTGTCTGAATAAGTGCTGGAACAACAGCCAGACCTGCAGCTGTCCATACTGTAAAGAAACATTTAGACACAGACCTGATCTCAAGATTAACACCACACTCAGAGAGATCTCAGAGCACTATAAAGAGAAAAAGCCTGAGGAAAAGGCTGAAGTTGTGTGTGACGTCTGTGAGGACAGAAAGCTGAAAGCCCTGAAGTCGTGTCTGGTGTGTCAGAGCTCTTACTGTCAAACTCATTTAGAGCGTCATTTGAGAGTGGCAGGATTAAAGAAACACAAACTGATGGATCCTGTGAGGAATCTGGAGGactatatatgtcagaaacacgACAGACCTCTGGAGCTCTTCTGTAGAGATGATCAGACGTGTGTGTGTTCATTCTGTATTGAGAAAGACCATGAAAACCACAACACTGTTCCTCTAGAAGAGGAGAGTAAAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAGGACAGAATCAAGAAGATTCAAGATGTCAAACACTCAGCAGGAGTCAGAAAAATAAACTCAGAGAAGGAGAAAGCAACTCACGTGGAGATCTTCACTGATCTAATCCGTGCCATTGAGAGATGTCAGACTGAACTGCTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAGGAGGAAGAGCTGATTGAAGAGCTGGAGCAGGAGATCACTGAGCTGAAGATGAGAAACACTGAGCTGGAGCAGCTCTCACACACTGAAGATCACCTCCACCTCCTACAGAGTTACTCATCCCTGCACAGAGCTGCAGACACCAGGAACTGGCCTGAGATCAGTCTGAAGACTCAGGAGAATCTGGAGACTCTGAGAAGAGCTTTAAATACACTAAAGGACACTGTAGAGGAGAAAATCACACAAACTGAGCTGAAGTGGAAGCAGCAGTATGCAGTGGATGTTACTCTGGATCCTGATACAGCTCATCCTAAACTCATCCTGTCTGATGATGGAAAACAAGTGAGATGTGGAGACATCAGACAGGAACTCCCAGACACACCACAGAGATTTGATTACTGTCCCTGTGTCTTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTGAAGGGAAAGACTGACTGGGATTTAGGAGTGGCCAGAGAATCCATTAACAGGAAAGGAAAGATCACACTGACTCCCGGTAATGGATTCTGTACTGTGTGGTTgaggaaggaaaatgaatgtttctctctgtctctgaaAGTGAAGCCGCAGCGGGTCGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGATCAGACTTTCACTGATAAACTCTATCCATATTTCAGTCCATGTCCAAACTATGAAGGTAAAAACTCAAACCCACTGATCATCACTCCTGTTAATTACAACAAATAA

Function

symbol description
zgc:173581 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Orthologous to several human genes including TRIM43 (tripartite motif containing 43); TRIM43B (tripartite motif containing 43B); and TRIM48 (tripartite motif containing 48).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080212-7 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Orthologous to several human genes including TRIM43 (tripartite motif containing 43); TRIM43B (tripartite motif containing 43B); and TRIM48 (tripartite motif containing 48).

Ensembl:

ensembl_id ENSDARG00000100909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027576 True 1650 mRNA 0.45 7 4076259 4083621

Neighbor

gene id symbol gene type direction distance location
XLOC_013777 btr25 coding upstream 4482 4059200 ~ 4071777 (+)
XLOC_013776 btr24 coding upstream 18389 4051535 ~ 4057870 (+)
XLOC_013775 btr23 coding upstream 29035 4038589 ~ 4047224 (+)
XLOC_013774 meaf6 coding upstream 43228 4024443 ~ 4033031 (+)
XLOC_013773 eva1bb coding upstream 213886 3849378 ~ 3862373 (+)
XLOC_013779 TRAPPC9 coding downstream 55444 4139065 ~ 4341690 (+)
XLOC_013780 trappc9 coding downstream 359664 4443285 ~ 4447733 (+)
XLOC_013781 kcnk9 coding downstream 379768 4463389 ~ 4531049 (+)
XLOC_013782 dre-mir-30a coding downstream 653955 4737576 ~ 4737664 (+)
XLOC_013783 CABZ01063426.1 coding downstream 687298 4770919 ~ 4771035 (+)
XLOC_013768 NA non-coding upstream 287038 3740565 ~ 3789221 (+)
XLOC_013769 NA non-coding upstream 290731 3760176 ~ 3785528 (+)
XLOC_013771 NA non-coding upstream 299417 3763157 ~ 3776842 (+)
XLOC_013770 NA non-coding upstream 312589 3760398 ~ 3763670 (+)
XLOC_013765 NA non-coding upstream 497638 3573901 ~ 3578621 (+)
XLOC_013784 CU652215.1 non-coding downstream 692671 4776292 ~ 4776413 (+)
XLOC_013787 NA non-coding downstream 810616 4894237 ~ 4895341 (+)
XLOC_013788 NA non-coding downstream 829188 4912809 ~ 5163694 (+)

Expression


Co-expression Network