XLOC_013780 (trappc9)


Basic Information

Item Value
gene id XLOC_013780
gene name trappc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4443285 ~ 4447733 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027579
ATGTGCTGGTGAACGGGAAGCCGTGTGATTGTGACGTGGTTGCCGACTGTAATGTTGGAGATGCCGTGCCGTTAGAGGTGAAACTGACCAATCGCAGTAAGAGCGCCGTCGGGCCCTTTTCTCTGACCGTCGTCCCCTTCCAGGACTATCAGAACGGGGTGCAAAACTACGAGCTGCAGGACGCCGTCACCTTCATCGGCTCCAACACCTTCTACATCAACTCGGTGAAACCCACAGAGGACTCAGTGTGTGTAGGAGCTCTGCTCTTCTTATACACCGGCGACTTCTTTCTCAACATCAAGTTTCAGGATGACAGCGCTGGACGAGAGCTGCCCCCAGCCTGGTTCTGCCTGCCCAGCGTCCACATCAAAGCCCAGGAGCCAATTGAAGCCGGCGcatgacctttgacctctgaCAGACTCAGTAGGCCTCTGAGCTGATCTAGATATTTATTACAGAGTCTAGAGTATCAGTGGACGAAGCTGCAGATGTTGCCAAATCCTCCACTTTAGGTTTAGTTTTTCTCTTTAACTCTTAAAAACTGGCAGAAAAGATGATCATTTTTCTGAAAACCAATGTAAAATGTGAAATCTGCTGGTTAGCTTCATGAGTCAGTTTAAGGAAACTTGTCCAGCTTATATTTTAAGCAAACATGTAAAGAAACAGCAAGAATAATTCAGATTTATTTGAAACTTTAATCTTGAAGGCATTTTCTTTTCGATTATGACattattttaatcataataaagcactttttttttgcacaactcTCATTACTGTAATgtttactttataaaaaaatactaatgaattagtaaaaaaaatttgaTGGCAACATAATTTAAGCTTATATtgaatactaataattattaataaatatataacccataaatttatatatactgtatatagtttttAGTTTTATAGTATTTTCACTTTTCCAACTaacaatatatatacagtatatagttaaACTAAGGAAATTAAGAAActacttgaatttatttattcattcattcatttaaacagAGAGCAAAAATCAGTCAAAGGCATTCGAAAGATGTGgggaaaaatattacaaaagtctttattcacatggctaatctTTAAAGAACTTACACATTTTGGCAGAGAGCTgtcttcatcagggtaacagtgatcaggtgagtatggagtttttttattttaaatctatggTCTCATTACTCATTAGAATAtcgaaaccatattaaaacaatatattaaacaacGTCAACTCAACAATCATCATTAATTTAGCATTAGAggaaggaatatatatatatatacagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagaaagatgATGCGTGTAATACAACATATTTCTCAAATAATACAACATATATGTAGAATGAAaccgaaaaaaatttatatttagacaaataaacaaatatagtgTACAAGTAAATGCATTACATGCATGCatatttaagtgtatttattcgtacagtttatttgtttatttgtctatatattcatttttttgcttCTTATTCTCACTATATATATTTCCTAGAGATGAgatgtggctggaagagcatacactgtgtaaaacatgctggataggttgatggttcattccactgtggcgaccccagattgattgAGAAGGACCAAGGcgaaaagagaataaatgaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatttttttttttttttcaatgctaaATTAATGATGATTGTTGAGTTGatgttgtttattatattattttagtatggCTTCGATATTCTAATAAGTCAGGAGACCGTACAATTCAAAAGAAACTCCAGACTCACCTGATCAATGTTACCCTGAGGAAGGCAGCTCTCTGCCGAAACGCGTAGGTTCTTTATAGaatagccatgtgaataaaggctttttaaaaatttttacacatttttcgaatgccttggactgatttttgctgtttgttctgaTGAATCTCTTGCTCAAAGAGCACCAACATGTTATTTGAGCTACCCTAGAGCACTTTCTGTTtgattttggttatttatttatttgtctgtattAGGAACCAACAAGCTTTActccacaaaaataaataaattaattaattaattaattaaaaaaaacataaatctgtagttatttttttaagtaaagcttGTTGGTTCGTAATAAAGTTTATAAGTTAAGTAATAAGTTTTTTCTATTttcaaaaaacattacaaaaaaaaacttttttttttttacagcagaggTAAGAAATTATTAAATCGGTGGTAAAACCctgattttaaatcacaaaagatctaaatgacattatttttatttgaaaattgccataaaaatgttatcagaccttttCATAAACAGATATAAAACATGCCTAAATAATCATCCAGTGTAAACAGAATTATCAAGTGGTCTCTTAATTGTTTTTCATAGCTGTGTACAATTATGATCTCAAATAagttcaagtttgtttgtttttttatactatGGTAATGAGAGCTGGATGTAAAATGTGCTTaattgtgaacaaaaaaaaataaataaaataaataaaaaatgtcatagAATCATCTGAAATATGACCTGGACAAGATCTCTCCAGGTTTGACTTTATTATGTGCATGTAAATAGTAGACCTGTCACAATATTTTCATGTATGAATGTTTGCCGCTTATAGCACATTTGGGGGTTCATAAATCAGATAATGGGCTTCATAACTGGTTTTCTGTCAGTGTGAATTGGACTTTTATGTAACTACAGAACAATTTTGTATCTTTGACGTGTTTGCTTGTGAATTTGATGAAGATTTTGATCAATCTCTTCAAATTCTAGGCTGAAATTTCACATGTTGTCTTCTGTCGTGGCGATTATACTCATTAGATAAA

Function

symbol description
trappc9 Predicted to be located in Golgi apparatus. Predicted to be active in trans-Golgi network.

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDARG00000103106

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027579 True 2983 mRNA 0.31 2 4443285 4447733

Neighbor

gene id symbol gene type direction distance location
XLOC_013779 TRAPPC9 coding upstream 101595 4139065 ~ 4341690 (+)
XLOC_013778 zgc:173581 coding upstream 359664 4076259 ~ 4083621 (+)
XLOC_013777 btr25 coding upstream 371508 4059200 ~ 4071777 (+)
XLOC_013776 btr24 coding upstream 385415 4051535 ~ 4057870 (+)
XLOC_013775 btr23 coding upstream 396061 4038589 ~ 4047224 (+)
XLOC_013781 kcnk9 coding downstream 15656 4463389 ~ 4531049 (+)
XLOC_013782 dre-mir-30a coding downstream 289843 4737576 ~ 4737664 (+)
XLOC_013783 CABZ01063426.1 coding downstream 323186 4770919 ~ 4771035 (+)
XLOC_013784 CU652215.1 coding downstream 328559 4776292 ~ 4776413 (+)
XLOC_013785 st3gal1l coding downstream 352335 4800068 ~ 4813760 (+)
XLOC_013768 NA non-coding upstream 654064 3740565 ~ 3789221 (+)
XLOC_013769 NA non-coding upstream 657757 3760176 ~ 3785528 (+)
XLOC_013771 NA non-coding upstream 666443 3763157 ~ 3776842 (+)
XLOC_013770 NA non-coding upstream 679615 3760398 ~ 3763670 (+)
XLOC_013765 NA non-coding upstream 864664 3573901 ~ 3578621 (+)
XLOC_013787 NA non-coding downstream 446504 4894237 ~ 4895341 (+)
XLOC_013788 NA non-coding downstream 465076 4912809 ~ 5163694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_03786208_03790365 NA coding CI01000319 null 3786208 ~ 3791000 (+)
bowfin (Amia calva) G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding CM030130.1 CM030130.1 27888558 ~ 27982127 (+)
tiger barb (Puntius tetrazona) G74367 NA non-coding NC_056708.1 CM032077.1 2459812 ~ 2460152 (-)