XLOC_013785 (st3gal1l)


Basic Information

Item Value
gene id XLOC_013785
gene name st3gal1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4800068 ~ 4813760 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027584
TATAACCCACTCCAGGAAGATCcatgtatttttgcattttcatcTACCCTtactaaaataacaaaactaTCAGACAAGCAGGTGCACTAACCATCGTCATCAGGAGTCACACACAAACCCCGCCTTCCTGCTGAAGTCTAAAAACACAGCACAGGTCACATTACTCTTACACACACCATCAGGGAAAACTAGAGAAGATTGGGTTTCACAGAACAAGTTTGAGAAGTAAACCTAACAAGACCTCTCCAAAGCAGGTCAAATACATTTCTGATTTCAATGGCAAAACTGAGGACCACTGTACAGCTGAAACGTCATTTCCGCTACATCACAGCATTTCTGAGCTCTACTACTATcttgttatttttgtattttcaaaacTCAGCAGTAATTACCACCTATGCTTCTTATGGGATCGCCTCAAAACGTGCTGCATGTGGATGCAATACATGTGTGGCGAGCCGAGAAAATGGTACTTGGTTCAGTGAGCGGTACAACCGCACCATACCATTTCTGCTCAACAGCACCAACAGTGAATTAAATGAAGACATCTTAAAGTGGTGGAAGGGGCTTCAAGGTGCAGCAGATGTCATCAACTACACATATGTGGTGGACATTTTGTTTTCTCTGTTCCCCGATGAAGATCACTTCTCAGATGCTGGTCCAGATCGCTGCAGGACCTGTGCTGTGGTGGGAAACTCTGGGAACCTTCTGCGCTCCAATTATGGGCGTCTCATAGATCTTCATGACTTTGTTTTGAGGATAAATAAAGGCCCGACAAAAGGTTTTGAGAAGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGTGCTGTGGATTTGGACAACTCCACTCATCTGGTGCTCTTTCCTTATAAGATTCTGGACATGCAATGGCTCATTAGTATCTTCACAACTAAACACATCACAGAAACATACATGTCAGTACCATCAACAATCAACGCAGACAGGGACAAGGTGATGATTCTCCATCCTGAATTCATCAAATATGTGAATGATAAATGGGCTGAGGGTCATGGTGGATATCCCTCCACTGGCTTCTTAACGCTGATATTTGCTCTTCACATCTGCGACGAGGTGAATGTTTTTGGGTTCGGAGCTACCAGTGAAGGACAGTGGCATCATTATTTTGACGATTCGATGACTTCCTTTAGCAATCTTCACGGTGGAGACTTTGAAAATCAAACGATTCATTTCCTCCATCAACAAAACAAGATTTCATTGCACAAGGGTTGGACATGAAGCAGGTTTCAGGAGAAACATGAGTACCCCGTGACATCAGTATTGGATAATGAGCTGAGGAATCTGAACTTGCAGGTCTACGGGAGACGTGACGAGAGATCAACTTTCCTGAGGAGATTCATTTGAGCTCAATGAAAATGTGGctttaggttatttatttatttattttgatgaacTTTCCAGGATCTTCAAGCACCACTGAGGCTCGCTGTTTACAATGGAATCCACACATTAAAGGCATCTTTCTGTATGTTAGCTTCGGGAAATgaagttgaattaaataaatataggaGCTGGAGCGACCTGGGCTACAAAACACTTCAGCACATGCCACTAACACATATAACATCATGGCATGTGATTGCTGAAGTAATTGATGCAGAAATATACAGCGCAGACCAAGTATTAGGTGCTTTACATGTTCACACTGTTCAGTAGTCCAACATTTCTGTGTTACAAATCCTGCTGCTGTTTGCTATAACTGATATTGTGATTTAATCTGAGATGCTGTCatactgtaatattttaatttaatctaagATGCTGTTATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTCatactgtaatattttaatttaatctaagATGCTGTTATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTCatactgtaatattttaatttaatctgaGATGCTGTTATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTCATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATACTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATACTGTAATTtatactgtaatattttaatttaatctgaGATACTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATACTGTAATTTATATGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATACTGTAATTTATATGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATACTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTtatactgtaatattttaatttaatctgaGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTACACGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATATGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACGGTAATATTGTGATTTAATCTGAGATACTGTAATTTATATGGTAATATTGTGATTTAATCTGAGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTAATTTACACGGTAATATTGTGATTTAATCTGAGATACTGTAATTTATATGATAATATTGTGATTTAATGTGAGATACTGTAATTTATTCGGTAATATTGTGATTTAATCTGAGATACTGTAATTtatactgtaatattttaatttaatctgaGATGCTGTAATTTATACTGTAATATTGTGATTTAATCTGAGATGCTGTCATTTATACtgtaatattttcatttaatCAGAGTTTTAGCGTTTCATTTGCTGTAAGccatcaaattaaaaagaaataaacatttaaaatacaataatatgcgtgtaataaatcta
>TCONS_00027585
ATGGCAAAACTGAGGACCACTGTACAGCTGAAACGTCATTTCCGCTACATCACAGCATTTCTGAGCTCTACTACTATcttgttatttttgtattttcaaaacTCAGCAGTAATTACCACCTATGCTTCTTATGGGATCGCCTCAAAACGTGCTGCATGTGGATGCAATACATGTGTGGCGAGCCGAGAAAATGGTACTTGGTTCAGTGAGCGGTACAACCGCACCATACCATTTCTGCTCAACAGCACCAACAGTGAATTAAATGAAGACATCTTAAAGTGGTGGAAGGGGCTTCAAGGTGCAGCAGATGTCATCAACTACACATATGTGGTGGACATTTTGTTTTCTCTGTTCCCCGATGAAGATCACTTCTCAGATGCTGGTCCAGATCGCTGCAGGACCTGTGCTGTGGTGGGAAACTCTGGGAACCTTCTGCGCTCCAATTATGGGCGTCTCATAGATCTTCATGACTTTGTTTTGAGGATAAATAAAGGCCCGACAAAAGGTTTTGAGAAGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGTGCTGTGGATTTGGACAACTCCACTCATCTGGTGCTCTTTCCTTATAAGATTCTGGACATGCAATGGCTCATTAGTATCTTCACAACTAAACACATCACAGAAACATACATGTCAGTACCATCAACAATCAACGCAGACAGGGACAAGGTGATGATTCTCCATCCTGAATTCATCAAATATGTGAATGATAAATGGGCTGAGGGTCATGGTGGATATCCCTCCACTGGCTTCTTAACGCTGATATTTGCTCTTCACATCTGCGACGAGGTGAATGTTTTTGGGTTCGGAGCTACCAGTGAAGGACAGTGGCATCATTATTTTGACGATTCGATGACTTCCTTTAGCAATCTTCACGGTGGAGACTTTGAAAATCAAACGATTCATTTCCTCCATCAACAAAACAAGATTTCATTGCACAAGGGTTGGACATGA
>TCONS_00027586
TTCCGCTACATCACAGCATTTCTGAGCTCTACTACTATcttgttatttttgtattttcaaaacTCAGCAGTAATTACCACCTATGCTTCTTATGGGATCGCCTCAAAACGTGCTGCATGTGGATGCAATACATGTGTGGCGAGCCGAGAAAATGGTACTTGGTTCAGTGAGCGGTACAACCGCACCATACCATTTCTGCTCAACAGCACCAACAGTGAATTAAATGAAGACATCTTAAAGTGGTGGAAGGGGCTTCAAGGTGCAGCAGATGTCATCAACTACACATATGTGGTGGACATTTTGTTTTCTCTGTTCCCCGATGAAGATCACTTCTCAGATGCTGGTCCAGATCGCTGCAGGACCTGTGCTGTGGTGGGAAACTCTGGGAACCTTCTGCGCTCCAATTATGGGCGTCTCATAGATCTTCATGACTTTGTTTTGAGGCCCGACAAAAGGTTTTGAGAAGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGTGCTGTGGATTTGGACAACTCCACTCATCTGGTGCTCTTTCCTTATAAGATTCTGGACATGCAATGGCTCATTAGTATCTTCACAACTAAACACATCACAGAAACATACATGTCAGTACCATCAACAATCAACGCAGACAGGGACAAGGTGATGATTCTCCATCCTGAATTCATCAAATATGTGAATGATAAATGGGCTGAGGGTCATGGTGGATATCCCTCCACTGGCTTCTTAACGCTGATATTTGCTCTTCACATCTGCGACGAGGTGAATGTTTTTGGGTTCGGAGCTACCAGTGAAGGACAGTGGCATCATTATTTTGACGATTCGATGACTTCCTTTAGCAATCTTCACGGTGGAGACTTTGAAAATCAAACGATTCATTTCCTCCATCAACAAAACAAGATTTCATTGCACAAGGGT

Function

symbol description
st3gal1l Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in anterior lateral line neuromast; anterior lateral line primordium; integument; and otic vesicle. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060321-2 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in anterior lateral line neuromast; anterior lateral line primordium; integument; and otic vesicle. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000079310

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027584 False 3484 mRNA 0.34 7 4800068 4813760
TCONS_00027585 False 993 mRNA 0.44 6 4800549 4811545
TCONS_00027586 True 934 nonsense_mediated_decay 0.44 6 4800588 4811536

Neighbor

gene id symbol gene type direction distance location
XLOC_013784 CU652215.1 coding upstream 23655 4776292 ~ 4776413 (+)
XLOC_013783 CABZ01063426.1 coding upstream 29033 4770919 ~ 4771035 (+)
XLOC_013782 dre-mir-30a coding upstream 62404 4737576 ~ 4737664 (+)
XLOC_013781 kcnk9 coding upstream 269019 4463389 ~ 4531049 (+)
XLOC_013780 trappc9 coding upstream 352335 4443285 ~ 4447733 (+)
XLOC_013786 cdk12 coding downstream 42591 4856351 ~ 4905342 (+)
XLOC_013787 NA coding downstream 80477 4894237 ~ 4895341 (+)
XLOC_013788 NA coding downstream 99049 4912809 ~ 5163694 (+)
XLOC_013789 stard3 coding downstream 155187 4968947 ~ 4985996 (+)
XLOC_013790 zgc:91968 coding downstream 176560 4990320 ~ 4999232 (+)
XLOC_013769 NA non-coding upstream 1014540 3760176 ~ 3785528 (+)
XLOC_013793 NA non-coding downstream 339684 5153444 ~ 5171518 (+)
XLOC_013796 NA non-coding downstream 510318 5324078 ~ 5332785 (+)
XLOC_013797 NA non-coding downstream 583182 5396942 ~ 5411847 (+)

Expression


Co-expression Network