XLOC_013789 (stard3)


Basic Information

Item Value
gene id XLOC_013789
gene name stard3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4968947 ~ 4985996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027593
AGCTGGTGGAAGTGACGCTTTCCAACATCCGGTTGTTATTGCGGAAGATCAGAAGGCTGATACTGAAGAGTGATGCGCTGATTCTGGGATGTGCTCGGGCTGCATGCAGTAATGCCGAGCGCCGTGGATTACAGCGAGTTGGGTGGAAGTCTTCCAGCCATTGCTTCTTTAAACGCCTCGTATTCCCAGGCGTCCCTCTCCCTTCCCTCCCCGTATTATTGCCCGCTGCCCCCGGGAGAGAGGAAAGCCTTCTCGGACGTACGTCGGACCTTCTGCCTCTTCGTTACGTTTGATCTTCTCTTCATTACTCTGCTCTGGATCATTGAATTAAATatTAGTAAGAGTATATGGAACAGTCTAGAGAATGAGGTTGTTCACTATAATTTCAAGTCATCTTTCTTTGATATCTTTCTTTTAGCTGTGTTTAGGTTTCTGTGTTTGCAGCTTGGTTATGCTGCTTTTCGACTGAGACACTGGTGGGTTATTGCGATCACTACTCTGGTGACCACAGCCTTCCTCATTGCCAAAGTCATCTTGTCAGATTTGTTTAGTCAGAATGCTTTTGGCTATGTTCTTCCCATCACCTCGTTTGTGGTGGCGTGGCTGGAAACCTGGTTCCTGGATTTCAAAGTGCTCACGCAGGAAGCAGAGGACGAGAGAGTGTATCTGGCAGCAGTGAATGCGGCGTGTGAACCGGCCCCTCTCATCTGTCCTAGACCCGTGTCTGATGGACAGTTTTACTCTCCACCAGAGTCCCTGGCAGGTTCAGAGGACGATCTTGATGAAGAGGGTCTTGGCAGGAGAGCAGTAAcagaacaagaaaaGGCATTTGTAAGACAGGGGCGGGAGGCCATGGCGGTGGTGGAACAGATACTCACACAAGAGGAAAACTGGAAATTTGAGAAGACTAATgagcTGGGTGATGCAGTATATACACTTGAAATCCCGTTTCATGGGAAAACGTTTATTTTAAAGGGTCTTTTGCAATGCACAGCAGAGCTGGTGTATCAGGAGGTCATTTTACAGCCAGAGAAGATGGTGCAGTGGAACAGAACCGTGTCTGTTTGTCAGATTTTACAGAGGGTTGATGACAACACAATGGTGTCGTATGATGTGTCTGCTGGAGCGGCTGGAGGTGTCGTGTCTCCCAGGGACTTTGTGAATGTTCGTCGGGTGGAGCGCAGACGAGACTGCTACATCTCTGCAGGAATGGCCACCAATCACAACTCCAAACCCCACCACAGTCGCTACGTCAGAGGGGAGAATGGTCCTGGTGGATTTGTGGTGTTGAAGTCCAGCAGTAATCCTTCAGTTTGCACCTTCATCTGGGTTCTCAATACAGACCTTAAGggTCGTCTCCCACGTTACCTCATCCACCAGTCTCTGGCCGCAACTATGTTTGAGTTCATGTCTCATCTCAGGCAGCGTATAAACGAAGTCCACGTCTCGTACCGGTGACCTATCGACTCTGAAGTCACCACGATGTAAACTGTGGTCGGGTAAAGAGTCAAAGTACACACTGTGCCATATTCATTCTCCTGTGCGAACAAGAGTCGCCATGAGGAAATTCCGCGTTACATTTGACTGGCGGGAGATTGTTACGGTTGACTGCGTCTACGAAAATCTGGCTGCTCTTTATACTGACATTAAAGTTGATGCAGATGTACTACAGGAGCACATGAGGTCATAACGCAAACGGTCAAATGCCACACGAGCCGAAATCATGCAAATATAAAGAGAAATGCATGCGTTTCTAATATCAGGTGTGCCTAAAACCCACTGTCGCCACCTAGTGAACACGACTGAAGACTGGGATGCTTTCTTGATGAGATTCTGAGCCAAATACGCTGTGGTTTCTCATTCTACTTTTACTCGCGCCTTAATCAATCAAGCACACTCAGTCATACTAATTAACTTTTGTCTTATTATGTTTGGCTCTCGTTGCCAATCTTTGATGTATTGGATTATTAAATATAAGAGCATTCATCTGTAGCGTATATATCGGTTTTCATTTGACGCCTATGATTATTAGTCTAACAATGCACACTGTTTCGTTTATGTATTGTCTTAAATCAAATGAAATGCGCTGCAACAACATTCTgcttgattttattcaacaagaaACTGGTGCAAAGCAGCATAAAGTTGATTTGTAATGAATATAACAGGCCTTTTGTTGAAATACGTGCAGTTTTTTTGGTTTTGCATGTTGGTTCGTGTTCTCTCAGAGCATTACTGTCAATATTTTATTGGTTTTTAACTCATGTTTACCACATTTATGCACAAACAAGGAACTAAGTCATGGTCCCGAGTTGTTCAGTGGGTTATTGTCTTATAGAAACGCCACTAGTAAATTGTGAACGTGTCCTTCATTAATAGATGCCTTGGATCAAGCAAACAATGCGTTTAATAAAGAGAAAAGACACTCTTACAGGGTATTGGATTTCATTTTATCGGCTTATCGGATTACGTCGATCTTATTTTGCCCGTGTGTTGGTTTGAACTTGTGTGCCTTTTGTTACGGTTTGTGATTGCTTgcgatatttgttttatttcatgatCTTTTTATTGACTGTAACCACATTTCTTTGTGCAGAGCCTTTTTAAATGGCTTGAAGTCACTTGTGATTCAGGTTGTGAGTGAATGTTATTTTTATACTGATTTGCATTAATATGAAGCTACACCGAATTCTGTCATGTGATTCAGAAatcatgattttaaaaaaatcaacgtTTAATAAAACTAACAGACAGTT
>TCONS_00027594
TGTTGATTTTTTCGGCTTTCAGCGGTTTTGGTGCTTATTACATACTTATAAACAACTTATCTCAACTGTCACCCATCCGACTGGTTGGTTTATAGAGCAGGATGTGCTCGGGCTGCATGCAGTAATGCCGAGCGCCGTGGATTACAGCGAGTTGGGTGGAAGTCTTCCAGCCATTGCTTCTTTAAACGCCTCGTATTCCCAGGCGTCCCTCTCCCTTCCCTCCCCGTATTATTGCCCGCTGCCCCCGGGAGAGAGGAAAGCCTTCTCGGACGTACGTCGGACCTTCTGCCTCTTCGTTACGTTTGATCTTCTCTTCATTACTCTGCTCTGGATCATTGAATTAAATatTAGTAAGAGTATATGGAACAGTCTAGAGAATGAGGTTGTTCACTATAATTTCAAGTCATCTTTCTTTGATATCTTTCTTTTAGCTGTGTTTAGGTTTCTGTGTTTGCAGCTTGGTTATGCTGCTTTTCGACTGAGACACTGGTGGGTTATTGCGATCACTACTCTGGTGACCACAGCCTTCCTCATTGCCAAAGTCATCTTGTCAGATTTGTTTAGTCAGAATGCTTTTGGCTATGTTCTTCCCATCACCTCGTTTGTGGTGGCGTGGCTGGAAACCTGGTTCCTGGATTTCAA

Function

symbol description
stard3 Predicted to enable cholesterol binding activity and protein homodimerization activity. Predicted to be involved in cholesterol transport and vesicle tethering to endoplasmic reticulum. Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum-endosome membrane contact site and late endosome membrane. Predicted to colocalize with endoplasmic reticulum membrane. Is expressed in yolk syncytial layer. Orthologous to human STARD3 (StAR related lipid transfer domain containing 3).

GO:

id name namespace
GO:0030301 cholesterol transport biological_process
GO:0099044 vesicle tethering to endoplasmic reticulum biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0044232 organelle membrane contact site cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04979 Cholesterol metabolism

ZFIN:

id description
ZDB-GENE-001120-2 Predicted to enable cholesterol binding activity and protein homodimerization activity. Predicted to be involved in cholesterol transport and vesicle tethering to endoplasmic reticulum. Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum-endosome membrane contact site and late endosome membrane. Predicted to colocalize with endoplasmic reticulum membrane. Is expressed in yolk syncytial layer. Orthologous to human STARD3 (StAR related lipid transfer domain containing 3).

Ensembl:

ensembl_id ENSDARG00000017809

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027593 False 2756 mRNA 0.44 15 4968947 4985996
TCONS_00027594 True 642 mRNA 0.46 6 4969062 4973165

Neighbor

gene id symbol gene type direction distance location
XLOC_013786 cdk12 coding upstream 63605 4856351 ~ 4905342 (+)
XLOC_013787 NA coding upstream 73606 4894237 ~ 4895341 (+)
XLOC_013785 st3gal1l coding upstream 155187 4800068 ~ 4813760 (+)
XLOC_013784 CU652215.1 coding upstream 192534 4776292 ~ 4776413 (+)
XLOC_013783 CABZ01063426.1 coding upstream 197912 4770919 ~ 4771035 (+)
XLOC_013790 zgc:91968 coding downstream 4324 4990320 ~ 4999232 (+)
XLOC_013791 eno2 coding downstream 86922 5072918 ~ 5090732 (+)
XLOC_013792 si:dkey-89b17.4 coding downstream 148628 5134624 ~ 5150153 (+)
XLOC_013793 NA coding downstream 167448 5153444 ~ 5171518 (+)
XLOC_013794 si:dkeyp-113d7.10 coding downstream 305939 5291935 ~ 5311471 (+)
XLOC_013782 dre-mir-30a non-coding upstream 231283 4737576 ~ 4737664 (+)
XLOC_013771 NA non-coding upstream 1192105 3763157 ~ 3776842 (+)
XLOC_013796 NA non-coding downstream 338082 5324078 ~ 5332785 (+)
XLOC_013797 NA non-coding downstream 410946 5396942 ~ 5411847 (+)
XLOC_013799 NA non-coding downstream 433705 5419701 ~ 5425735 (+)
XLOC_013800 BX323079.1 non-coding downstream 439836 5425832 ~ 5428334 (+)

Expression


Co-expression Network