XLOC_013794 (si:dkeyp-113d7.10)


Basic Information

Item Value
gene id XLOC_013794
gene name si:dkeyp-113d7.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5291935 ~ 5311471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027607
CCACGACGTGTTTCAGGCGAGAAAGGGGTGACTGTTCGTTTCTAAGCAGTTGTTCTGGGGGGACTTCTGCATGTTTAACACTATTTTGGGAGGTGGGAAGAGGAAGAATGAAAGAGGTCTTCCAACGGAGCGGTCGTAAACATGAACGGTGCCCTGTACATTTCGTTTTTCCAAGGTCAGCTGGAGTCCGCACTGGAGCAGGTAGTGCAGCTCGCCGTTCAGGAAATCACCAAGACTGTTGGGGCCACTTTGAATTCAATGCTATTGGAAACGGCCACCAAAGAGCAGGAAAATCAGCGTTTGAGGGCGACCCTGCAGTCTCGGGAGCAAGCATACGGCGGTAACGGGAAAAGCAATGCGGCTAAAGGGAAAACAAACACGAATGATGGAACAAAGCAACACACCCCCAGTCGGAGCCCTGAATGTGGCGTTCAGTCTGAGACGCTCAGGCGTGAACAGAAAGAGCGAGCAGTTGGTCAGTTGAAATCCGTCATGGAGCACGTGCTGGAATTCGCAGTTCGTGAGCTGACCAAAATTGTGGAGGACAGTTTCGACGACCTGCTCTTGGAGTTCACCAAGAAAGAGCGGGAAAACCACACCTTGAAAGAACAGCTACAGGACAAGAAAGTAGTGGAGGACAATAAGGCTGTTACTGTGGAAACGGAAGATCAGGATAATGACTCTGCTTCTCCGAGCAGTTCCAAAGTGGAAAAGCAAGAGTCGAAAAGCCTCCAGGACCAATCGCCCAAAAAAGAGTGGGAAAAGGAGCAGACTGAATCCACCAACGAACCAGACAAGCAAACGGTCATTGCAGTGGCTCAGGACTGGGTGCCTATCCTAGATAAAGTCTTTGGGCAGAAGTGGTGCAGTGACCTCTGGCAAATCAAAGAGGTCACCACTAGTAAGGAGCAGCACACCGGCCTGAGCTCGGGCCCCATGACTGACATGGACAGTCTTATTCGGGAGACGCTCATGCCATCTTGCCTGGCCACTCAAAGGAGGCTGGAGCTTGAGGTGGGGCAGCCGCCTTGGTTGCAGGCAGACGATATGGAGGTTCTGTCTTTATCCTCTGAAGCCCAAGGCGTTCCTGTCGTCAGCTCCACAGgtGATGACTCTCAAATCAGATCCCCTTCAATGTTGCAAAGACTCCTGACACTCCCTTCCCAGTTGCTTGAGGATGACGATGAGTCAATGGATGCTGCTCCAAGTGTAGAAGCGTCCACGGAACCAGCCGATTCACAAAGCAGCAAAGGCCCAAAGAGTAACCAGAAGAGAAAGGAAGAAGAGAATGAAGATGAGGAGGACGACGAAGATGACGACGAGGCCACGAACAGATGCGAGTCCTCGAAACACAAAGGTAGGAGGAAATCCCATGCTTGCAAAGAGTGCGGGCGAAAGTTCAGTCGAGCACATCTTCTCAGAGCTCACCGGCAAACACATGAGGAGACGCCTAACCAGTGCCCACAATGCGGAAAGAGCTTCTCCCAGTCATCGAGACTCCAGGCTCACTTACGAACGCACACGGACAAAATCATGTAATCGGGGAATTTAGGAAATGAATTGAAAAAGGGAATGTTTGTTGTAATTTGGTCGAGACGGTAAATTTCATTTCAAGTTCTGCTAAAGAAAATGCAAAGCTTGTAGCctttttttgttagtttgaaGGTACTCTGAGGATCTTCAGATGCTTTTTACCTTCATTTCAGTTCCCTAATTTTAGGGATTCAAATATCAACTGAAGAAACAACAAATGTCAGTAACGACAAGCTGTGTACGCATTGTAAATATCAAAGTAGGGCTGTACAGATCATCAGAATAAGAATCGAAGACTTTTTTTCATTaagtgtgatttttctttttcgtAACACAAGGTTTCAAAGACCTGTGTAAATATTTCAAACATAATATGAAGCTGTTGTGTAACAGAAGAGGAGCGCAGTTGTTACGTCTCTTGTAGCATGCTGGTGTTGTTTTTTCGTTTAACAAAGTTTTGAATGTGATCGAACAAACCAGAGTTAGTGTAACGCGTCTCCTGCGATCAAATCGACCATCTTTTTTGACTTTGAACTCAACATGAAATACCTCTTACGTTTTGATGTCATACTGGATTTTTTGGATATT
>TCONS_00029859
gttcagttggccggGCCTGCCCCGGTTGAaaaaggtgtgccagagcgcggttcactcgGGCTCAGGCGCAGtgcacttgtagtgtgagtgcaaagcccATCTGAGCCAGAAACTGAAGACGAGGCGTGACTTtcaagggactgtttcatatggatttatgaaTCATTCCttctgttcaatgaacacaaactgtcgcaGTTTACTAAAGaggcaaacccctcactgcacgacaggtgcaccttcagcaaacctcctaatacctgcagaaTGAATACtttgattatttatattttatttattaaaagtggCCAATCttttcggcgaaatatttgaatgcataataaatgactaaaatgatataactaaagaaatctccactgtgctgagcgagaacgCTTCTCTTATGTTAAACTGAACAGCGTagcatcaatgacgtaagcgtgctcggGCTCAGATGCAATGTGAGTGCCGGCCGTCAGGTGGAGAAGggaagggggacaagcgtgctttggcaaggttcaaggcaactgtacatagtgtaagCACGCCCCTAGTGTCACAACTTGGCCTGATTAAGCACGTGTCAGACATTGGCAAAAGAGTACTTTAATTGGTTGTTTGGCATCGAATCAGAGCGTGAGATCAAAAACGTGTGAAGTGATGTAACCAAATAAACCGTTCAAGTCAAGGGGAAACGCAAAGAAACAATTGTATTGTAGTTTTGATGCTTTTGTCAAATATTTGcaaccggtcaatctacgttcatactctcacctatggtcatgagctttgtgtcatgactgaaaggacaagattttGGATATACGAGGCAAAAATGAGTTTcattcgcagggtggcagggtgcaccctcatagatagggtgaggagctctgtcacccgggaggagtgctcctccacatcgagagaagtctgCTGAGGTGagtcgggcatctgtttcggatgcctcctagaCGCCTACCTAGGAAGATATTCCAGTCATGTCCCATCGGCAGAAGGCCAAGGGAAGACTCAGGACACGCTGATGGGACTAtatctctcagctggcctgggaacacctctgGATCTCCCTGGGGGAGCTGGAGTAAGTAtctggggagaggaaagtctagggttctctcctaagactgctgcccctgcgacccggccccatgaaagcggatgaaaatgaatgatttgcACAAGCAAATCTTTTCGTGATGAGTGACAAGTACTGTAAAAGTGGTACTGAACACTTTTTTGTAAGTGTGCATCACTAGTTCTAGTTTTCCTTTGTGGAATTTTGGTCGGCTGCCTTCTGTTTCATATgttcacacacagctttttggTCCTGATGCAGCTGATCTTGCACATTAGCTTGTTGTGTCCTAGGCTTAATACATCTAAAATTTGAACGCATATCAatgtttccttcttttttttttttttttttgcataggtGATGACTCTCAAATCAGATCCCCTTCAATGTTGCAAAGACTCCTGACACTCCCTTCCCAGTTGCTTGAGGATGACGATGAGTCAATGGATGCTGCTCCAAGTGTAGAAGCGTCCACGGAACCAGCCGATTCACAAAGCAGCAAAGGCCCAAAGAGTAACCAGAAGAGAAAGGAAGAAGAGAATGAAGATGAGGAGGACGACGAAGATGACGACGAGGCCACGAACAGATGCGAGTCCTCGAAACACAAAGGTAGGAGGAAATCCCATGCTTGCAAAGAGTGCGGGCGAAAGTTCAGTCGAGCACATCTTCTCAGAGCTCACCGGCAAACACATGAGGAGACGCCTAACCAGTGCCCACAATGCGGAAAGAGCTTCTCCCAGTCATCGAGACTCCAGGCTCACTTACGAACGCACACGGACAAAATCATGTAATCGGGGAATTTAGGAAATGAATTGAAAAAGGGAATGTTTGTTGTAATTTGGTCGAGACGGTAAATTTCATTTCAAGTTCTGCTAAAGAAAATGCAAAGCTTGTAGCctttttttgttagtttgaaGGTACTCTGAGGATCTTCAGATGCTTTTTACCTTCATTTCAGTTCCCTAATTTTAGGGATTCAAATATCAACTGAAGAAACAACAAATGTCAGTAACGACAAGCTGTGTACGCATTGTAAATATCAAAGTAGGGCTGTACAGATCATCAGAATAAGAATCGAAGACTTTTTTTCATTaagtgtgatttttctttttcgtAACACAAGGTTTCAAAGACCTGTGTAAATATTTCAAACATAATATGAAGCTGTTGTGTAACAGAAGAGGAGCGCAGTTGTTACGTCTCTTGTAGCATGCTGGTGTTGTTTTTTCGTTTAACAAAGTTTTGAATGTGATCGAACAAACCAGAGTTAGTGTAACGCGTCTCCTGCGATCAAATCGACCATCTTTTTTGACTTTGAACTCAACATGAAATACCTCTTACGTTTTGATGTCATACTGGATTTTTTGGATATTTTTCATCAACCTGTCACAATGGATGGAAGATGGCGtacagatttttaaaatgcacAATAGTCAACATTGCATGACGTGCACAACCAAGGAGCAGTTTGCAAGCAGGATGAagagaaaagttcatttgaaagAGACTTCAAGTTCCTAATCCTTCACCATATTCACAAAGAGGATCTGACTTTTCTGGTATCCTCGACTAGAGTAGCGTCTTCCTGTACTGATTACGTGTAGTGTTTGCTCTACATCTTGAACTTGGAGTAATGCTCAGTTGTTgatatgttgtttttttccagtGTCAATGGCATATATCTGAATATGGAGTCTTCCATATGGAAGTAGTTACCATTTCTAAAATGGCGGATGGTCCCTATATGTACACCTTATATCGACGGGAACGGTAACAGCGGATTCCCACTTGTTATGCACATTCCCGATCTCGACCCTGAAGTTTTTACAATATCCCTGCCAGTAATAAGCATGATGGGGAAAAAGTACAAGATGTTGCTCTCACTTTTTGGATCAATACCTCATCGGTGGGATCATATCTTTTGGGACTTCTGCAATATTAGAAGTTAAGATCCGAATCAAAAAAGTTTACAAAATGGAACGGGACCGGCTTTTGGCCTACACATTATTTGactgtgcatttaaaaatgtggcttattttttttttcgttttatgCTATCTTTTGTCCCCATAGGAAGGTACCAAGAACTTGCAACCCAAAGATTACAATGAAGGGAAACCTTTTTTCGACCAcatgtacttttttattattattattattactattatgggCCATTACATGTTACATCATGACTCTTAAGCTTTTTTTGTACTGAGTATCTTCATTAGTAGATTATAATGAAGTATGTCATCTTTTGCTAGTGCCTAGATTTAACCGTTCTATAAGCCGATTAGCTCATAGTTTAGCACCCTACCTTTTGTTTGGATACTAATTACTTTATACTTGTGCTTAGTGCTCAGTTCTAGATTTTCTTTAACTGCGTAGTCAGTGATGATTTCCTTGTaattacaaatgttaataaaaaaaataaaaaaaacgtataGATGAGCATAGAAACGACAgccaaaaaaatttaacaaatgttttctttCGTGGCCAGAATGACATTGAGTAAATGACAACTGGTTAGATTAGTAAAGTCTAAATTACTCTAGAGTTGTTGGAACTCAACAGGGACTGGTTATATTAGTTAAGCCCAAAGTATTCTTCTGTTTTTTTACGCGTACGTGAGGTAGATTTATAAATCCCAATAGCTGTGTTTTCATTGTTACTCCTCAAATTGCATTAAAACTTGGACGACACTTCATCTTTTAACCAtaataactgtaataataataacggcTAGTTCTGTAGCtttgaaatacataaaaaaaaatccatcattATGACTTAAGACgagagaaaataaactaaaatgttttagttttgtgtaaatatggtatatgcacacagacttttaatttcaaccTGCCAGCCTCAGGGCTTCTGGTCAACTGCCATTCCATTATACAATTGCCATGTTTAAGGTTTGATTTCTTTAAAAGTCattgatcttcactgcctgatagatatatgatataaagtgggcctcagactggacaagaaacactgcattaaaatccatctcCCCCtggcatgtctttaaaatattttaccccAATATTTTCAAGAGTTTCTGCTCTCGTCTGCTGATTTTGATTAGTCTCTTTcttctcgttttacacttgaacaactaaatgaatgcttaagtctattaaactgaatgtattgtaattatattattacaagattgatgctgtaaaaggagccttatgaaattaaaaatagtcagaaTAAACTTTCActgaaagtttatcattggctgaataACACTatctgtgcatagagcccatagATAACGTAAACAAAGCTCTAGAAGAAGCTGTTTACACTTTTTATCTTAAAAGCAAGTACACTTTTTTTGTTATGGTTATGCCTGGGTAGCCAGTTAAGTTTCAGTTTGATCACTCTTTGTTGTCATGGAGCAGCTGAGCTTTCTTGATGGTAGCTAAAGTCCAGAATTGGtgcaaactgaactgaaacttaACTGGCTAGCCAGCTAATCTGCCGTCATGGTACAGACCCTTGCTGTTCACACTACTCCGGCATCTTCGACCCATGAAAATggagcattttgaaaatgcagaAGACTCCATTTTAGTTTCGAAATGACGGCGATCATTTCAGTATAGATGCAAACTTTTGATAATCGAAGTTTGGCTATCCACAGTCACTCACTGACTGGTATTCTGGACTTGCGTATCATTCCCTGATTGATCAGGTGCTTTTAATATGATCGTTACAAAAGCAGTTCAGTTTTGACACCTTTCGGGTCAAATTAAGTGAAAAACTAATTGCTTATGTGCTGTATGGATAGAAAAATCCTACTGGAGGCTCACCATACTGTGCTTGGGGCAatttgcatcacacacacactgtatgcaTACCCTAACGCATTGTTTCctaaccacattcctggaggaccaccgcCACTGCAACTTTTGGATGTCTCTTATGTCAGGTCTTTCCgactctgctaatgagctgaagatctgaatcaggtgtgtttggtttagAACTTTAGAACTTTGGttcgaaatcgcctactactcagtaggtactgcatttgaatttaaatgtattactcGACCCTTTAAAAATGTACGTtctgtacagtataaatgtgagtaGGTTGAATGACCGCCGATGTACTACATCCATCATTTTGTCATAATTAAGTAACCTACCCCCCGTCAACTGAGTcgctcccattcatgaattctcttgcgacGCATCATGGGATAGCTAAGCATCCATCAGAttcacacttcagaatctcgccggaagtagtaggtcatctgtgTACTTCTCACATATCGTTTTTAAATTCTATGAAATCGGACATACTACTTTGCTCGCATACtatttttagcgtactatatagtatggaagtatgcaatttcagacgcagcctggAAAATTTTGTcctcctccaggaatgtggttgagaaacactgcccagacatgcatataaaaaccgAAATATACTTTGGGCTTGAGGGcattttcacacctgtagattcTTTGCTTTGTTCCAAAGTAGATTTACTTGGATCATTTTCTCAAGGCGACATGTCTATATAGGCCAACATTAGGCAATAaagtcacatgcgagtaaactTCCTTGCCTTTGGTCATAGAGACTCATCTGAACTAAAGGAAGTAAAGATCTGCAGATTTATGGTggttttctttgctttttttttttttttttaaatgtggtttAAGTAGTTCTAAAATATTAGTCCGGCCAAATTTCACATGGTCTTTTTAAACTTTAGGATAATGCATGAGTTATTCTGATAGATATTAGCAAAACTAGTTGCAGTTAATATACATAACCCATCATAAATCAGGATAGAGCATGGGTGGTTAGGTTTTATGGTTTTCTCACCACTCCATAGATTGGATTCAAGTAGGGCAAGTGACCACGGAGCAATTGTTTGGTGCAGATCTGAACACGATTGCCTTCTTTTATGCCTAAACAAACAAGCTTTTTAAAATGCACCAGGAAATGCTCTAAAAGAACAAGGTGTAGAGTTTGGTGTGTTggcatgtacactacctgacaaaagtcttgtcgtcaatcccagttgtaagagcaacaaataataataacttgacttctgaaccgcatcccaatcattacgaatactacagaagacctactggaactagCATGGACccgagattctcacagaaatcagtcaagtttggtgaaggaaaaaaatcatggtttggggttacattcagtatggggtgtgcgagagatctgcagagtggatggcaacatcaacaacctgaggcatcaagacatttgtgctgaccATTACAtgacaaaccacagcagagggcgaaatcttcagcaggatagcgctccttctcacacttcagcctccacatcaaagttcctaaaagcaaagaaggtcaacgTGCTCCAGGACtcaccagcccagtcaccagacatgaacattattgatcaTATCTGGGGTAAGACGACAGAGgaattgaagataaatccaaaaaaGCTTGacgaactctggaagtcctgcaagattGATTTGATTTTGAACTAAATGATCGAcaagaagttaagttattatttgttgttcctaaaacttggataggcgacacaacttttgtcaggtagtgtattctaAGTCACAATAAGCAATTTAAATGAGTATTGAAGGACTTGAATTTTGCCTTTGACAGCCCCTTGTAGGCTCATCTATTTAAGAGCACCGATTAAAGTAAATTAGCATGCGAATCCATTTTGGGGCGTAGCTATTTATTCAGTTAGTATTGGCGAATGTGTGGTGTGGTTTCTTGTAAAAACGACATTGCAACTCTGTGCTGTATGTAGTGCCTGAAATTGTGTGTGCATTTGCGTCTGCAGTCGGTCATGATGGAACTTAACTGACTGGTGTTGATATCAgaaattcattgtttttttttatgaagcaAAGCAAACAGAAGCCAAACAATCTGTAAAATGAGTTTGTGATGCAGTCCTTCATTCACCCACAGATCTGCATAATTCCTACAAACTTACTTGAAAATGTAGATGTTTTTAATGTTATGCATGATGATGacttttatcctttttttttataaatctattTGTGTATTGAAAATAACACTAGCTCTTATACCAGACCAATTGGATCATCTCTTTTTCCATGGATCATGGTCAGTAGTTTTAAGTTACTGCATAGTCGCTTTGAATTGATCTTAAGAGTTCAGCATTTGACCGGTAAATGCTTagtattaattttcttttcccaTTTGATTTTTCTCTTCAGTATATATTTTGCACTGTTACTCCAAACATCCATACCTCAGTTTTGTCGGTTGTCTGAAAGCATTACTTTGAAATCAGAtgggtttttttgttttatcagttCATTATCTCAGGACTTGTTCATGTGATTTTAGCATATTTGGGTTTACATTCAGCAATTTTTGTCTAAATTTACAGGTCTAAATTAAAAAAGGGGGGATTGTCAAACTGATATGTGTGACTTTTCGAAAGTGCACAGCTAATTATGAACCACGTACATGGGAATTAAATGCTAAATCTTGTCAGTGTTGCACAACATTTCGGTCAGTGATGGTTACAAAAGGGAAgttgtgtatatttgtatttttgattGGATGATTTTGTGAATGCCTGTTTTTTGAAACAACATTTGATTTCAattttttcccccccaaaaaaggtgatttttttttttttaatcactgaaATGTCTTTTAATGTGACTGGAAGTAGTTGTACATTTGAATTATGGCAATACATTAAAAGGTGGGAAAATG

Function

symbol description
si:dkeyp-113d7.10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-80 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000092359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027607 False 2121 mRNA 0.47 4 5291935 5306024
TCONS_00029859 True 7919 lncRNA 0.39 1 5303553 5311471

Neighbor

gene id symbol gene type direction distance location
XLOC_013793 NA coding upstream 120417 5153444 ~ 5171518 (+)
XLOC_013788 NA coding upstream 128241 4912809 ~ 5163694 (+)
XLOC_013792 si:dkey-89b17.4 coding upstream 141782 5134624 ~ 5150153 (+)
XLOC_013791 eno2 coding upstream 201203 5072918 ~ 5090732 (+)
XLOC_013790 zgc:91968 coding upstream 292703 4990320 ~ 4999232 (+)
XLOC_013795 si:dkeyp-113d7.1 coding downstream 4516 5315987 ~ 5320330 (+)
XLOC_013796 NA coding downstream 12607 5324078 ~ 5332785 (+)
XLOC_013797 NA coding downstream 85471 5396942 ~ 5411847 (+)
XLOC_013798 eif1 coding downstream 106535 5418006 ~ 5421610 (+)
XLOC_013799 NA coding downstream 108230 5419701 ~ 5425735 (+)
XLOC_013787 NA non-coding upstream 396594 4894237 ~ 4895341 (+)
XLOC_013784 CU652215.1 non-coding upstream 515522 4776292 ~ 4776413 (+)
XLOC_013783 CABZ01063426.1 non-coding upstream 520900 4770919 ~ 4771035 (+)
XLOC_013800 BX323079.1 non-coding downstream 114361 5425832 ~ 5428334 (+)
XLOC_013806 NA non-coding downstream 710276 6021747 ~ 6022074 (+)

Expression


Co-expression Network