XLOC_013815 (zgc:162972)


Basic Information

Item Value
gene id XLOC_013815
gene name zgc:162972
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6896184 ~ 6901351 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027624
GTCCACTCGTCGATTAAAATATCTGGCTGAGGGTTGTCTATTGTCAGTCACACAGACGGGAGCGCGCAGTATCGTTGCTTTCTGACATGATTCATTTGCGCGTCACATCCAATCTCAGTAGCAAATCTTCGCGGTGACGTGCAGCAATGTTTATCACCGatatttcagaaaaataaagcTTTCGTCTTCAGCTATTGTGAAGtttacttTAGATCAAATGGATATAAAAGAAGAAGACTGCGTCTCTCAGTCTGGGACGCATATCACAGAACAATCGAGCCTAAAGATTAAAACGGGAGAGACGGCCTtcacctgcaaacagtgtggaGAGATTTTCACAACAAACCAAAGTCTTGAAAGTCACAAAGTGATTCACACCGGAGAACAACATTATTTTTGTTcagagtgtggaaagagtttcactcaAATGCGGTATCTTAAAAATCACATGAAGATTCACGCTGGAGATCACCCCTTCACTTGTCCGGAGTGTGATAAGTGTTTCACAATGAAACACAGCCTTGAAAGTCACTTAAAAATTCACACTGGGGAAAAGCCATTCACCTGCCCTGACTGCggaaaaaaattcagattaaaGCAAAGCCTGGAGggccacatgaggattcacaccggagagaaaccttacacatgtcaaaattgtgggaagagtttcagagaGAAACAAATCCTCGACACGCACTtgacgattcacactggagaaaagccttacTCCTGccctgagtgtggaaagagtttcagagtAAAAAAGTGCCTTGAAAACCACATCAAAACtcatactggagagaaaccttacacatgccaagagtgtggaaagagttttgcaataaaacaaaacctAGAAaggcacatgagaattcacactggagaaaagccttacTCCTGCCCTGAGTGTGGAAGGAGTTTCAGAGTGAAACAAGATCTTAAAATTCAtgtgagaattcacactggagaaaaacctttctcctgccaacagtgtggaaaaagcttcacCGAGAACAAGAAGCTTGAAagtcacatgagaattcacactggagaaaagcctttCGTCTGCTCTCATTGCGGAAAGAATTTCAGAGGGAAACAAAACCTTGAGAGCCACATGAGACTTCACACCGGAAGCAAGCCTTACacctgccctcagtgtggaaagagttataACCAACAAAAAAGCCTTGACATTCACATTAggactcacaccggagagaaacctttTGCTTgcgatcagtgtggaaagagttttactcATCAAAGTAACCTTAAGGGTCACAttaggattcacaccggagagaaacctttTACTTGCCctcagtgcgggaagagttttaTAGAGAAAACAAAACTGGAGAGGCACAAGAAAATTCACTCTGGAGAAAAGCCTTACGATTGCCAGCACTGTAAAAAGAGTTTTACGTTAAAGCAAAGCCTGGACATTCACATGAAACTTCATACCAGAGAGAAACCGTACtcctgccaacagtgtggaaagagtttcagagtGAAACAGAAGCTCGTATCCCACATGACAGTTCACACTGAAGAGAAGCCTGCACTTGGCGTGGAAGTAGTTTTAGAATGAAACAAGGCCTCAAAAGTTACACAAGAACATTCTGGggaagc
>TCONS_00027625
AGTCACACAGACGGGAGCGCGCAGTATCGTTGCTTTCTGACATGATTCATTTGCGCGTCACATCCAATCTCAGTAGCAAATCTTCGCGGTGACGTGCAGCAATGTTTATCACCGatatttcagaaaaataaagcTTTCGTCTTCAGCTATTGTGAAGtttacttTAGATCAAATGGATATAAAAGAAGAAGACTGCGTCTCTCAGTCTGGGACGCATATCACAGAACAATCGAGCCTAAAGATTAAAACGGGAGAGACGGCCTtcacctgcaaacagtgtggaGAGATTTTCACAACAAACCAAAGTCTTGAAAGTCACAAAGTGATTCACACCGGAGAACAACATTATTTTTGTTcagagtgtggaaagagtttcactcaAATGCGGTATCTTAAAAATCACATGAAGATTCACGCTGGAGATCACCCCTTCACTTGTCCGGAGTGTGATAAGTGTTTCACAATGAAACACAGCCTTGAAAGTCACTTAAAAATTCACACTGGGGAAAAGCCATTCACCTGCCCTGACTGCggaaaaaaattcagattaaaGCAAAGCCTGGAGggccacatgaggattcacaccggagagaaaccttacacatgtcaaaattgtgggaagagtttcagagaGAAACAAATCCTCGACACGCACTtgacgattcacactggagaaaagccttacTCCTGccctgagtgtggaaagagtttcagagtAAAAAAGTGCCTTGAAAACCACATCAAAACtcatactggagagaaaccttacacatgccaagagtgtggaaagagttttgcaataaaacaaaacctAGAAaggcacatgagaattcacactggagaaaagccttacTCCTGCCCTGAGTGTGGAAGGAGTTTCAGAGTGAAACAAGATCTTAAAATTCAtgtgagaattcacactggagaaaaacctttctcctgccaacagtgtggaaaaagcttcacCGAGAACAAGAAGCTTGAAagtcacatgagaattcacactggagaaaagcctttCGTCTGCTCTCATTGCGGAAAGAATTTCAGAGGGAAACAAAACCTTGAGAGCCACATGAGACTTCACACCGGAAGCAAGCCTTACacctgccctcagtgtggaaagagttataACCAACAAAAAAGCCTTGACATTCACATTAggactcacaccggagagaaacctttTGCTTgcgatcagtgtggaaagagttttactcATCAAAGTAACCTTAAGGGTCACAttaggattcacaccggagagaaacctttTACTTGCCctcagtgcgggaagagttttaTAGAGAAAACAAAACTGGAGAGGCACAAGAAAATTCACTCTGGAGAAAAGCCTTACGATTGCCAGCACTGTAAAAAGAGTTTTACGTTAAAGCAAAGCCTGGACATTCACATGAAACTTCATACCAGAGAGAAACCGTACtcctgccaacagtgtggaaagagtttcagagtGAAACAGAAGCTCGTATCCCACATGACAGTTCACACTGAAGAGAAGCCTGCACTTGGCGTGGAAGTAGTTTTAGAATGAAACAAGGCCTCAAAAGTTACACAAGAACATTCTGGggaagcaTGTATTAAAACAATTCTATGG

Function

symbol description
zgc:162972 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-49 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000076134

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027624 False 1638 mRNA 0.43 2 6896184 6901280
TCONS_00027625 True 1615 mRNA 0.43 3 6896229 6901351

Neighbor

gene id symbol gene type direction distance location
XLOC_013814 FP074867.1 coding upstream 2909 6891821 ~ 6893275 (+)
XLOC_013813 CR391908.1 coding upstream 268894 6627173 ~ 6627290 (+)
XLOC_013812 NA coding upstream 449875 6440411 ~ 6446309 (+)
XLOC_013811 NA coding upstream 489976 6383905 ~ 6406208 (+)
XLOC_013810 NA coding upstream 582680 6313208 ~ 6313504 (+)
XLOC_013816 si:ch1073-127d16.1 coding downstream 2963 6904314 ~ 6908682 (+)
XLOC_013817 si:ch73-367f21.4 coding downstream 9033 6910384 ~ 6916246 (+)
XLOC_013818 si:ch73-367f21.5 coding downstream 16784 6918135 ~ 6923690 (+)
XLOC_013819 si:ch73-367f21.6 coding downstream 26878 6928229 ~ 6934199 (+)
XLOC_013820 flot1a coding downstream 36938 6938289 ~ 6957404 (+)
XLOC_013809 BX004874.1 non-coding upstream 800452 6095618 ~ 6095732 (+)
XLOC_013821 NA non-coding downstream 86387 6987738 ~ 6988985 (+)
XLOC_013824 FP085393.1 non-coding downstream 133855 7035206 ~ 7035320 (+)
XLOC_013832 FP101875.1 non-coding downstream 340766 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 343348 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 373232 7274583 ~ 7275354 (+)

Expression


Co-expression Network