XLOC_013816 (si:ch1073-127d16.1)


Basic Information

Item Value
gene id XLOC_013816
gene name si:ch1073-127d16.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6904314 ~ 6908682 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027626
cgcttccgggtttttgcatacaaattgacgtcatagttcctccactctataataTAGAAAACGAAGACTAAGTGAAAACAGCAGATGGCAGTAATGCAACTTATGGATGCCAGCCACAGTTAactccagaagaagaaaacagTCCACCCGAGTCGTCGTAAGGAGTGAAATATCTGGCTGAGAGCTGTCTATTGTCAGTCACACAGACAGAAAGCTCGCAGTATTATTGCTTTTCTGACATGATTCATTTGCGCGTCACATCCAATCTTAGTAGCAAATCGCGGCGACGTGCAACGACGTTTATCGCCgacattttagaaaaataaagCTTTAAGAGACCCAACCGTCTTCAGCTGTTGTGAAGtttacttTAGATCAAATGGatataaaagaagaagaagaagactgtGTCTCTCATGACTCTCAGTCTGGGCCATATTTCACCGAACAACCGAGCCTAAAGATTCAAACTGGAGATATTTTCACACCGATCCAAAGCCTTGAAAGTCACAAAGTGAATCACTcagaaaaacaaacttttatttgtgcagagtgtggaaagagttttacactCAAGCGGTATCTTAAAAATCACATGAAGATTCACACCGGAGCTCATCCTTTCACTTGTCCGGAGTGTGATAAGTGTTTCACAATGAAACACAGCCTTGAAACTCACTTGAAAATTCACACTGGGGAAAAGCCATTCACCTGCCCTGACTGCGGAAAAAAGTTCAGATTAAAGCAAAGCCTGGACGGTCACTtaaggattcacactggagagaaaccttacacatgtcaagtgtgtgggaggagtttcagaGAGAAACAAATCCTCGATAAGCACTtgacgattcacactggagaaaagccttacTCCTGccctgagtgtggaaagagtttcagggTGAAAAATTGCCTTGAAAACCACATCaaaattcacaccggagagaaaccttacacatgccaagagtgtggaaagagtttcacagAGAAACAAAACCTAGAAAGGCACAtaagaattcacactggagaaaagcctttCGCCTGCCCTGAGTGTGGAAGAAGTTTCAGAGTGAAACAAGATCTTAAAATTCATTtaagaattcacactggagaaaagcctttctcctgccaacagtgtggaaaaagtttcTCAGAGAACAAGAAACTTGAAaatcacatgagaattcacactggagaaaagcctttCGTCTGCTCTCATTGCGGAAAGAATTTCAGAGGGAAACAAAACCTTGAAAGTCACATGAGACTTCACACCGGAAACCAGCCTTACacctgccctcagtgtggaaagagttacaACCAACAAAAAAGCCTTCAGATTCACATTAggactcacaccggagagaaacctttcGCTTgcgatcagtgtggaaagagtttcacacaACAAAGTACTCTAAAGGGTCACATTaagattcacaccggagagaaacctttcACTTGCCctcagtgcgggaagagttttaTAGAGAAAACAAAACTGGAGAGGCACAAGAAAATTCACTCTGGAGAAAAGGCTTACACTTGCCAGCACTGTAAAAAGAGTTTTACGTTGAAGCAAAGCCTGGACattcacatgaggattcacaccggagaaaaGCTTTAcacctgccaacagtgtggaaagagttttacagagaaacagaAGCTCTTATCCCACATGACAGTTCACACTGAAGAGAAGCCTGCACTTGGCGTGGAAGTAGTTTTAGAATGAAACAAGGCCTCAAAAGTTACACAAGAACACACTGGAtatctgaaataaaaactgaaatgtcACGTTGCCTTTGCTTAATGtggaatatgaatataatttgaatgttgtttaaaaaaaacaccataaAACACTTTCAGAATATTCTCCATTTAACGTCACTTTTTAGTTTCCTTCTTGTCCAGTCCAGTGTTTCACTCTAATAATTATAAGCCATTGCAATAAACAGTTAGAATGACtgattcaattaaattatttgattatttataagtGACATATAACTAACTCTGCCTTTCATTCTTTCTCTATTGCTAAGATGAGGACTTGCAGGTTTTCATCTTCGCATTTATTGCCTGTATTTTCTTGCTGTTTTCAAGCTGTTCCATCTTTAGCTCCaggaattgacccttcgctataagccacacccaaaaattggcacccaccaatcgtggcttagcaaccgta

Function

symbol description
si:ch1073-127d16.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120214-30 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000087674

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027626 True 2206 mRNA 0.41 2 6904314 6908682

Neighbor

gene id symbol gene type direction distance location
XLOC_013815 zgc:162972 coding upstream 2963 6896184 ~ 6901351 (+)
XLOC_013814 FP074867.1 coding upstream 11039 6891821 ~ 6893275 (+)
XLOC_013813 CR391908.1 coding upstream 277024 6627173 ~ 6627290 (+)
XLOC_013812 NA coding upstream 458005 6440411 ~ 6446309 (+)
XLOC_013811 NA coding upstream 498106 6383905 ~ 6406208 (+)
XLOC_013817 si:ch73-367f21.4 coding downstream 1702 6910384 ~ 6916246 (+)
XLOC_013818 si:ch73-367f21.5 coding downstream 9453 6918135 ~ 6923690 (+)
XLOC_013819 si:ch73-367f21.6 coding downstream 19547 6928229 ~ 6934199 (+)
XLOC_013820 flot1a coding downstream 29607 6938289 ~ 6957404 (+)
XLOC_013821 NA coding downstream 79056 6987738 ~ 6988985 (+)
XLOC_013810 NA non-coding upstream 590810 6313208 ~ 6313504 (+)
XLOC_013809 BX004874.1 non-coding upstream 808582 6095618 ~ 6095732 (+)
XLOC_013824 FP085393.1 non-coding downstream 126524 7035206 ~ 7035320 (+)
XLOC_013832 FP101875.1 non-coding downstream 333435 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 336017 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 365901 7274583 ~ 7275354 (+)

Expression


Co-expression Network