XLOC_013819 (si:ch73-367f21.6)


Basic Information

Item Value
gene id XLOC_013819
gene name si:ch73-367f21.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6928229 ~ 6934199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027630
AGACTAAGTGAAAACGGCAGATGGCAGTAAAGCAGCTTATGGATGCTAGCTGCCAAACTCcaaagaagaggaagaaaaacTGAGTCTACTCATAATAATATACTCATCTGAAGAGAATTGAAACATCTGGCGGAGAGCTGTCCATTGTCTGTCACACAGAAAGGAGCGCGCAGCATCGTTGCTGTCTGACACGCGCGACTCATTTGCGCGTCACATCCAATTTCAGTTACAAATCTTCGCGGTGACGTGCAACGACGTTTTTCGcagatattttagaaaaataaagcTTTAAGAGACCCAACTGTCTTCAGCTGTTGTGAAGATCAAATGGATATAAAAGAAGAAGACTGTGCACCCAATCATGAGTCTGGGATGCATTTCACTGAACAACCGAGCCTaaagattcacactggagagtcTGGAGAGCCTTTCACCTGCAAACAGCGTGGAGAGATTTTAACAACAAACCAAAGCCTTGAAAGTCACACAGTGATTCACACTGGGGATCAAAATTTTAATTGTGTagtgtgtggaaagagtttcacacaAAGGCGGTATCTTAAAAATCACATGAAGATTCATACTGGAGATCACCCCTTCACTTGTCCGGAGTGTGATAAGTGTTTCACAGTGAAACAAAGCCTTGAAACTCATTTGAAAATTCACACCGGAGAAAAGCCATTTATCTGCCCTGACTGTGGAAAAAAATTCAGAATAAAGCATAGCCTGGAGggccacatgaggattcacaccggggagaaaccttacacatgccaAGAATGTGGGAAGCGTTTCACAGAGAAACAAACCCTCGACAAGCACTtgacgattcacactggagaaaagccttacTCCTGccctgagtgtggaaagagtttcagggTAAAATTTTGCCTTGAAAACCACATCaaaattcacaccggagagaaaccttacacatgccaagagtgtggaaagagtttcacagAGAAACAAAACCTAGAAaggcacatgagaattcacactggagaaaagcctttCGCCTGCCCCGAGTGTGGAAGAAGTTTCAGAGTGAAACAAGATCTTAAAAGTCAcgtgagaattcacactggagaaaagcctttctcctgccaacagtgtggaaaaagtttcTCAGAGAACAAGACACTTGAAagtcacatgagaattcacaccggAGAAAAGCCTTTCGTCTGCTCTCATTGCGGAAGGAGATTTAGAGGGAAACAAAACCTTGAAAGCCACATGAGACTTCACACCGGAGAAAAGCGTTACacctgccctcagtgtggaaagagttataATGAACAAAAAAGCCTTCAGATTCACATTAggactcacaccggagagaaacctttTGCTTGCgatgagtgtggaaagagtttcaggcaACAAAGTACACTTAGGGGTCACATTAAgattcacaccggagaaaaacctttcacttgccctcagtgtggaaagagttttataGAGAAAACAAAACTGGAGAGGCACAAGAAAATCCACTCTGGAGAAAAGCCGTTCGATTGCCATCACTGTAAAAAGAGTTTCACGATGAAGCAAAGCCTGGACattcacatgagaattcacaccggAGAAAAGCTTTAcacctgccaacagtgtggaaagagttttacagtGAAACACAAACTTGAAAGGCACATGACAGTTCAtaccggagagaagccgtacacatgccaacagagTTTCAGAGAGAAACCGGGGCTCGTATCCCACATTAAAGTTCACACTGAAGAGAAGCCTGAACCTGAAGTGGAAGTAGTTTTAGAATGAAATAAGGCCTCGAAGAAGTTACATAAGAACACACTAGGTGCATGAAACTTCACATTACCTGTGCTCAATGGAggatatttatataatttgcatgctgtttaaaaaaaaatgctgttaaatTCGGAGTTGCAAGCCCAAACTCTACTTTTTTCCCGGATGTTAGTGTATGCGCACAGTTGAACACAGCTCTGTTCATATTCTTCATTCAACGACACTTCGTAgtttcataaaaatgtatttgaactcGTTCCAAGTTGCAATATAGTTTTTACCCACTTACATAAGTGTTAAACTAAGTTTACGCAACAAGGATCGTTACGTATTGAGTGTAATATTTGTAACAaagctagcgttttggaagtgctcttgcaaagcaacacaaacagcacgcagaagt

Function

symbol description
si:ch73-367f21.6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120214-31 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000089953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027630 True 2191 mRNA 0.42 2 6928229 6934199

Neighbor

gene id symbol gene type direction distance location
XLOC_013818 si:ch73-367f21.5 coding upstream 4539 6918135 ~ 6923690 (+)
XLOC_013817 si:ch73-367f21.4 coding upstream 11983 6910384 ~ 6916246 (+)
XLOC_013816 si:ch1073-127d16.1 coding upstream 19547 6904314 ~ 6908682 (+)
XLOC_013815 zgc:162972 coding upstream 26878 6896184 ~ 6901351 (+)
XLOC_013814 FP074867.1 coding upstream 34954 6891821 ~ 6893275 (+)
XLOC_013820 flot1a coding downstream 4090 6938289 ~ 6957404 (+)
XLOC_013821 NA coding downstream 53539 6987738 ~ 6988985 (+)
XLOC_013822 kifc1 coding downstream 56771 6990970 ~ 7000603 (+)
XLOC_013823 zbtb22b coding downstream 66971 7001170 ~ 7007154 (+)
XLOC_013824 FP085393.1 coding downstream 101007 7035206 ~ 7035320 (+)
XLOC_013813 CR391908.1 non-coding upstream 300939 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 481920 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 522021 6383905 ~ 6406208 (+)
XLOC_013810 NA non-coding upstream 614725 6313208 ~ 6313504 (+)
XLOC_013809 BX004874.1 non-coding upstream 832497 6095618 ~ 6095732 (+)
XLOC_013832 FP101875.1 non-coding downstream 307918 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 310500 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 340384 7274583 ~ 7275354 (+)

Expression


Co-expression Network