XLOC_013820 (flot1a)


Basic Information

Item Value
gene id XLOC_013820
gene name flot1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6938289 ~ 6957404 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027631
catcatacgCTGCTAATGGTTACAGGCTGCTGGATTACTGCGTCTCTTGTCTTGCACCGTTAAGAAAAAAACAGCAATCGTGTTATAAATAACCCTACTGATATTTACTAATCATTCAGCCAACGTCTAAAAATGTTTTATACCTGCGGTCCCAATGAGGCAATGGTGGTGTCAGGTTTCTGCCGTTCTCCACCAGTCATGATCTCTGGTGGGAGAGTGTTTGTTTTTCCATGCGTCCAGCAGATTCAAAGGATCTCTCTGAATACTCTGACGCTGAATGTAAAAAGCGACAAAGTGTACACACGTCATGGAGTGCCCATCTCCGTCACTGGAATCGCACAGATGAAGATTCAAGGACAGAATAAGCAGATGTTGGCTGCAGCGTGTCAGATGTTTTTGGGCAAGTCAGACAGTGAAATTGCCCACATCGCCTTGGAAACGCTGGAGGGCCACCAGAGAGCCATCATTGCTCACCTCACTGTGGAGGAGATCTACAAAGACCGCAAGAAGTTCTCCGAGCAGGTGTTCAAGGTGGCTTCATCTGACCTGGTGAACATGGGCATCAGTGTGGTCAGCTACACACTCAAAGACGTTCACGATGACCAGgATTACCTGCACTCTTTGGGAAAGGCCCGTACTGCACAAGTGCAGAAGGATGCTCGTATCGGTGAAGCTAAGAACAAAAGAGATGCAGTAATCAGGGAGGCTCATGCTATGCAGGAGAAGGTGTCTGCTCAGTACATGAATGAGATCGAGATGGCTAAAGCGCAGAGAGACTACGAGCTGAAGAAGGCCATCTACGACATTGAGGTCTTCACCAAAAAAGCGGAATCTGAAATGGCCTATCAGCTCCAGGTGGCGAAGACAAAGCAGCGGATCGAGGAGGAGAAGATGCAGGTGCTGGTGGTGGAGCGATCGCAACAAATCACGCTGCAGGAGCAGGAGATCTCACGCAAAGAGAAGGAGCTGGAGGCCAAAGTCAAGAAGCCCGCCGAGGCCGAGCGATACCGCCTGGAGAAACTGGCTGAAGCCGAGCGCCTTCAGCTCATCATGGAGGCAGAAGCAGAGGCTGAATCCATCAGAGTGAGAGGAGAGGCAGAAGCGTACGCTGTGGAGGCTAAAGGTCGTGCTGAAGCAGAGCAGATGGCAAAGAAAGCTGAAGCCTTCCAGCACTACAAAGAAGGTGCAATGGTGGACATGCTGCTGGAGAAACTTCCAATGATGGCTGATGAGATCAGTAAGCCTCTGTCAGCTACAAATAAGGTGACTATGGTCTCCAGCGGAGGTTCAGAGATTGGTGCTGCTAAACTGACAGGCGAAGTCCTCGACATCATGACCAAACTGCCTGAAACCATCGAGAAACTGACCGGCGTTAACATCTCCCAGGTGGCCCGAACCGGCTGAAGCAGTTCTCCGACATGAATACTGTATGCATGCTTCAGaaatcttttacatttttctcTGACTTCTCACATTTTCCTTCATGTTCGTTTTCTCCAACTTCCTCCTCTTTCAATAAGTCCATTTCTACCTTCATCATTCCTATCTTCCACTATATCTCTATTGTTTCccatgtttctctctctctccacttcCTGTCTGTCTTTGCCTTGCTGCCAAAACCCAAAGTGCATTGAAATCAAAACCTCCAGGGAAGAAAGCTGTTCTTTATATTTTGTAATGCAATCATAATAAGACAGTGAAGTCCAAGTATCCACTGAAAGCCATTAGTCGACGCAGCTTTTATCACATTCACCAGTCGTTTTTCCCTATAGAGTGCTTTTACATGTGGCCAGTGCATTCAGAGCTGTTATCATAGCTGAGCTTTCCATGGGAAAAGCCAAAGCAACTTGAAGGGAAACACGTTTCTGTTTCTGTGAGTGTAATACTTTCACTTTACCTCAGCGGTGTGTGTTTTAGCTATATTTGTTAGACACGACTACATTATTATAGGTTCAAATAGTACTCTGAAGATACTGCCAGTGTTTGAAGTGTTTATTCATATTATATCGAACAATCGAGTGTCTTTATATGTCTAGAAGAACTGTAGGTCGGtaattattctatttatttgaCAGATCTGTCATTTTAATGCTCTGTGCTGTCGTTTGAAGTGTTTTCACGCTTGACTGAAGAGTCTGAATATAGAAATCTGTACTGTTTCGTCCTAAAGAAGGCCATGTTGATGATATTGTGGCCATGTAGCAAATTTTTTAGGACTAGATTTACCAGGGAAACATGTTTGTTCTATTTATCTGTGTTCATCGGAGGATTTAGATAAAgactatttaaagggatagttcacccaacagtTCAAATTTGCTCATTATTTACGAGTGGTTatatagagcagtgtttctcaaccacgttcctggatgACCACCAGATCTGCACATTTCCCCATGtgtccttaaccaaacacacctgattcagatcttcagctcattagtagagattgaaagacctgtaatgggtgtgacagacaaaggagacatcaaagcatgcagtgctggtggtcctccaggaacgtggttgagaaacactgatatgAAGGGCTTTGAGTTTAACAACAGCGCATtcctaaataaaatgttttattattattattattattataaacatgatGACGTATTTTGATAAAAGcggaaaaccggtaaccattgacttcaattgtaggaaaaataaatactatagaagtcaatggttacaggtttttaacattcttcaaagtatctttttttgtgtttaacagatgaaagaagGTTTATAACAAGTAAAgagttaaaaaataatgacaattttgaatttttgtgtgaactacccatGTAAAATGGCTTGaatattacataaaaagagaTATTACGTTcaatactttttattaaatatgattctagttgatgatttgtttttaattatacagTATTCAATATTGGTTATACTATGTAAATCTTTGATTACATCATGATTGTTGTGAATGttgttttttaagtgtttaaatgtcagtacaatatattgtttttttaatgcacatttcatAAAACACGTCATAATATGttcattacatttaatatttactaaCATTATTACGATGTATACACAGTTACGGTGTTTACTAGATGTTGTTACGTAACGCAAACTGAACTAACCCCACATTTACGACACACATTTTTACACTCTTCATGATTAATGGATTATTATGGCTGATATTTCTGATGCATCTTATGAACGCTAAATATGAAGGCCTGTTTATTTACTATTTGTGGTAAGAtgtttgttaaagggatagttcacttcaTTCCCCTTTTACTCAAATTCTTCCAAAGGTGCTTTTTTCCATTTGacttaaaagaagatattttgaaaaatgttggaaatctgtaaccttTATTACTATTGAAGTTAATGGTCACAGacttctaacattcttcaaattatcttcttttgtgttcaacagaagaaagaactccATAAAGGGATAACAGatgtttcatttttgtgtgaactatccctttaagcatatACCGTAATGTTTGGATAGATTATTAGTATTCTAGCTTGGGCATTAGACACTATGTAGGATAAGGTTGCGGGTAAGAAAACCTATATTTGTCAATAGAtgcttttttctattttatacaGTATCTATATACTAATATCAATCACTCATGTGAAATGTTGCAGTTTCAACATGCATGCAAAGACTAACAAACCAAAACTGCTTTACTGTCTATTTGTGCTTCTATAAATGCCTTAAAGTAAACTCTCTCtctactaaaataaacatttaactaaaGTC
>TCONS_00027632
AAAACAGCAATCGTGTTATAAATAACCCTACTGATATTTACTAATCATTCAGCCAACGTCTAAAAATGTTTTATACCTGCGGTCCCAATGAGGCAATGGTGGTGTCAGGTTTCTGCCGTTCTCCACCAGTCATGATCTCTGGTGGGAGAGTGTTTGTTTTTCCATGCGTCCAGCAGATTCAAAGGATCTCTCTGAATACTCTGACGCTGAATGTAAAAAGCGACAAAGTGTACACACGTCATGGAGTGCCCATCTCCGTCACTGGAATCGCACAGATGAAGATTCAAGGACAGAATAAGCAGATGTTGGCTGCAGCGTGTCAGATGTTTTTGGGCAAGTCAGACAGTGAAATTGCCCACATCGCCTTGGAAACGCTGGAGGGCCACCAGAGAGCCATCATTGCTCACCTCACTGTGGAGGAGATCTACAAAGACCGCAAGAAGTTCTCCGAGCAGGTGTTCAAGGTGGCTTCATCTGACCTGGTGAACATGGGCATCAGTGTGGTCAGCTACACACTCAAAGACGTTCACGATGACCAGgATTACCTGCACTCTTTGGGAAAGGCCCGTACTGCACAAGTGCAGAAGGATGCTCGTATCGGTGAAGCTAAGAACAAAAGAGATGCAGTAATCAGGGAGGCTCATGCTATGCAGGAGAAGGTGTCTGCTCAGTACATGAATGAGATCGAGATGGCTAAAGCGCAGAGAGACTACGAGCTGAAGAAGGCCATCTACGACATTGAGGTCTTCACCAAAAAAGCGGAATCTGAAATGGCCTATCAGCTCCAGGTGGCGAAGACAAAGCAGCGGATCGAGGAGGAGAAGATGCAGGTGCTGGTGGTGGAGCGATCGCAACAAATCACGCTGCAGGAGCAGGAGATCTCACGCAAAGAGAAGGAGCTGGAGGCCAAAGTCAAGAAGCCCGCCGAGGCCGAGCGATACCGCCTGGAGAAACTGGCTGAAGCCGAGCGCCTTCAGCTCATCATGGAGGCAGAAGCAGAGGCTGAATCCATCAGAGTGAGAGGAGAGGCAGAAGCGTACGCTGTGGAGGCTAAAGGTCGTGCTGAAGCAGAGCAGATGGCAAAGAAAGCTGAAGCCTTCCAGCACTACAAAGAAGGTGCAATGGTGGACATGCTGCTGGAGAAACTTCCAATGATGGCTGATGAGATCAGTAAGCCTCTGTCAGCTACAAATAAGGTGACTATGGTCTCCAGCGGAGGTTCAGAGATTGGTGCTGCTAAACTGACAGGCGAAGTCCTCGACATCATGACCAAACTGCCTGAAACCATCGAGAAACTGACCGGCGTTAACATCTCCCAGTGCATTGAAATCAAAACCTCCAGGGAAGAAAGCTGTTCTTTATATTTTGTAATGCAATCATAA

Function

symbol description
flot1a Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0070528 protein kinase C signaling biological_process
GO:0045807 positive regulation of endocytosis biological_process
GO:0002090 regulation of receptor internalization biological_process
GO:1901890 positive regulation of cell junction assembly biological_process
GO:2000049 positive regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016600 flotillin complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020430-1 Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).

Ensembl:

ensembl_id ENSDARG00000001710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027631 False 3796 mRNA 0.40 13 6938289 6957404
TCONS_00027632 True 1382 mRNA 0.49 13 6938356 6955300

Neighbor

gene id symbol gene type direction distance location
XLOC_013819 si:ch73-367f21.6 coding upstream 4090 6928229 ~ 6934199 (+)
XLOC_013818 si:ch73-367f21.5 coding upstream 14599 6918135 ~ 6923690 (+)
XLOC_013817 si:ch73-367f21.4 coding upstream 22043 6910384 ~ 6916246 (+)
XLOC_013816 si:ch1073-127d16.1 coding upstream 29607 6904314 ~ 6908682 (+)
XLOC_013815 zgc:162972 coding upstream 36938 6896184 ~ 6901351 (+)
XLOC_013821 NA coding downstream 30334 6987738 ~ 6988985 (+)
XLOC_013822 kifc1 coding downstream 33566 6990970 ~ 7000603 (+)
XLOC_013823 zbtb22b coding downstream 43766 7001170 ~ 7007154 (+)
XLOC_013824 FP085393.1 coding downstream 77802 7035206 ~ 7035320 (+)
XLOC_013825 mhc1uka coding downstream 86230 7043634 ~ 7051481 (+)
XLOC_013813 CR391908.1 non-coding upstream 310999 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 491980 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 532081 6383905 ~ 6406208 (+)
XLOC_013810 NA non-coding upstream 624785 6313208 ~ 6313504 (+)
XLOC_013809 BX004874.1 non-coding upstream 842557 6095618 ~ 6095732 (+)
XLOC_013832 FP101875.1 non-coding downstream 284713 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 287295 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 317179 7274583 ~ 7275354 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_05618356_05625888 FLOT1, FLOT1A coding CI01000319 null 5618356 ~ 5626767 (+)