XLOC_013822 (kifc1)


Basic Information

Item Value
gene id XLOC_013822
gene name kifc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6990970 ~ 7000603 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027633
GCGGCCAGACTGAGAAGCTacacacacattttcaatttGAAATCTAAACGGCTACGAGAGATTTGTTTTGCGCTGgttgtgtattttgtgttttccataaCTGTATTTCTCAGATCTGCAAATAAGAACTGAAAAAGCTCCATGAACAAAGAGaacACATCTCGTCTCCCTGTTATGTCAGGGAAACGTGCTCACACCAACAGCACTGATGGGGAACAACAACAGCCTGCGCAGAAAAAGATGCGCAAGGTGGAGGTAGAGCCTTCTCAGAGGTTCAGGCCTGCCGCAAGTGTTGCACCCCCAAGACGTCCTGTAGCAGTCAAAGCTCCTGTCAAACCTCTACGTCCAACTGGAGCTGCAACAGTGGCTGCTGCTCCTGCAAGAGGTGACCAGAGAAGACCAGTTGCAGCAGTCGCTAAAGCCACTGCAGCTGTGTCTCGAAGGCCAGGATGGGACCTGAAAGGCAAAGTCAGCGACATGGAGGCCAAAGTTCAGAACTATCAGAGCAAAGTAAAAACTGTAAATCAGGAAAACGAGTGTCTGAAAGACTCCATAGCCAAAGTCCAAAGACGCACCGCTGATATTGAACAGGAGAATAATGGTCTCAGAAGGCGTCTTGGCGATTGTGAAAAGGAGCTGGTGAAGCTGGCCACAGTAAAAGATGACCTGGAGCACACCACCAAAGAGAGAGATGGCCTTCAGAAAGACCTCAGCAAGCTGACAGAGGAGCACAAGGTTTTGGAAGGACTCCGAGATCATTTAGAGTCTGAGCTTCGCAACATACAGACTCAGCTGGCCATTCAGACCTCTGCGTTGGGCCGGTGTCAAGACAGTTTGAAGGAGAGCCAAGAACTGGCCAGGAACCTTGAGGAAACGGTGGCCCGTCAACGAGAAGAACTCCATCTCGGAGAA
>TCONS_00027634
GCGGCCAGACTGAGAAGCTacacacacattttcaatttGAAATCTAAACGGCTACGAGAGATTTGTTTTGCGCTGgttgtgtattttgtgttttccataaCTGTATTTCTCAGATCTGCAAATAAGAAGAACTGAAAAAGCTCCATGAACAAAGAGaacACATCTCGTCTCCCTGTTATGTCAGGGAAACGTGCTCACACCAACAGCACTGATGGGGAACAACAACAGCCTGCGCAGAAAAAGATGCGCAAGGTGGAGGTAGAGCCTTCTCAGAGGTTCAGGCCTGCCGCAAGTGTTGCACCCCCAAGACGTCCTGTAGCAGTCAAAGCTCCTGTCAAACCTCTACGTCCAACTGGAGCTGCAACAGTGGCTGCTGCTCCTGCAAGAGGTGACCAGAGAAGACCAGTTGCAGCAGTCGCTAAAGCCACTGCAGCTGTGTCTCGAAGGCCAGGATGGGACCTGAAAGGCAAAGTCAGCGACATGGAGGCCAAAGTTCAGAACTATCAGAGCAAAGTAAAAACTGTAAATCAGGAAAACGAGTGTCTGAAAGACTCCATAGCCAAAGTCCAAAGACGCACCGCTGATATTGAACAGGAGAATAATGGTCTCAGAAGGCGTCTTGGCGATTGTGAAAAGGAGCTGGTGAAGCTGGCCACAGTAAAAGATGACCTGGAGCACACCACCAAAGAGAGAGATGGCCTTCAGAAAGACCTCAGCAAGCTGACAGAGGAGCACAAGGTTTTGGAAGGACTCCGAGATCATTTAGAGTCTGAGCTTCGCAACATACAGACTCAGCTGGCCATTCAGACCTCTGCGTTGGGCCGGTGTCAAGACAGTTTGAAGGAGAGCCAAGAACTGGCCAGGAACCTTGAGGAAACGGTGGCCCGTCAACGAGAAGAACTCCATCTCGGAGAAATGGAGCGAAGGAAACTCCACAACACCATTCAAGAGCTCAAAGGAAATATCCGAGTGTTTTGTAGGGTTCGGCCGCTGCTGACAGGAAATCAGTCTGATATTCTGCACATCCAGCTGCCTCCCCATGACAACAAGGCTCTCACTCTTGCCAAAATGGAAGAGTCTCACACAGGTCGCACCACTGACACACAGAAGAGCTATAACTTCAGCTTCGACCGTGTGTTTGGTCCTCGTTCTTCTCAGAGTGAGGTTTTTGAAGAGATTTCCCTGCTGGTGCAGTCTGCTCTGGATGGATACAACGTTTGTTGCTTTGCTTACGGCCAAACTGGCAGCGGGAAGACCTTTACTATGGAGGGGGGTGAACAGGAGGAATTGTGGGGGGTCATTCCACGCGCTGTCCAGCAAATCTTTAAATCCGCCAAAGCACTCAGTGAGCAAGGCTGGCAGTACTCTTTCACTGCCAGCTTTGTGGAGATCTACAATGAGACACTTCGAGATCTTCTCTACAAAGGCAAACCAAACAAGAGACCTGAGCACGAGATCAGGAAGGTGTCCAACAATGAGATCACTGTTACCAACCTGACCTACCAAAAAGTCAACAATGAGGATGAGGTGCACAACTTGATCATGTTGGCCAACCAGAACCGCTCCACAGCCCGCACGTGCATGAACGATCACTCCTCACGTTCTCACTCTGTGTTCCAGCTAGACATAGAAGGGGAAAACACAGCCAGAGACTCCAAGTGCAAGTCCATGTTGTGTCTGGTGGATTTGGCCGGTAGTGAGAGAGTGCAGAAGAGTCAGTCTCAAGGAGAGCGATTCAAGGAAATGACCGCCATCAACTCCTCCCTCACCAACCTGGGAATTGTAATCGCTGCTTTGGCCAACAAGGACAGCTTTGTTCCCTACCGTAACTCCAAGCTCACGTACCTCCTCCAGAACTGCCTCGGAGGCAACAGCAAAACTTTGATGTTTGCGAATATTTCACCTGAGGAAGAAAGCTTCAGTGAATCTCTGAATTCCCTGCGCTTTGCCAGCAAGGTGAACGACTGTGTCATCGGAACAGCTTCTGCTAACAAGAAGTAGCCTGGCTGTCATCTCCGAACATCCATTTTAATGCGTTTTTAACTTTTACCTGAACTTCAGTTATTCATTGTATATTCTCATCTCCCtccatattttatatttctgttaTGCTTTTTAATGTTCAGTCTCCCTGACAGAGTTTTAATGTTTTGCAACCATCAAAAGCATATTGTAATTCAACCTTTCAGTGATATCAATAAATGTTTCATGGCTTTGTAATGCAGTGGTGATTGTGATGCAAAGTGTAGACAGTTTTGGAAATGCATATGAAAATTGGTCATCTGTGTTTGTGAAAAATGCTAGTACAATTAAAAACAAGGTTACCATTATGTTGACCACTGTTTTAGTAagacatattttgtttttgtaaaaactattttagtataaattttgttgttttttaagtaaTAGTTCACAGTATGTGCATTTCGATGTATTTTGGATCAAACAAATGCATAAATGGTACATATAGAACCTG
>TCONS_00027635
GGCCAGACTGAGAAGCTacacacacattttcaatttGAAATCTAAACGGCTACGAGAGATTTGTTTTGCGCTGgttgtgtattttgtgttttccataaCTGTATTTCTCAGATCTGCAAATAAGAACTGAAAAAGCTCCATGAACAAAGAGaacACATCTCGTCTCCCTGTTATGTCAGGGAAACGTGCTCACACCAACAGCACTGATGGGGAACAACAACAGCCTGCGCAGAAAAAGATGCGCAAGGTGGAGGTAGAGCCTTCTCAGAGGTTCAGGCCTGCCGCAAGTGTTGCACCCCCAAGACGTCCTGTAGCAGTCAAAGCTCCTGTCAAACCTCTACGTCCAACTGGAGCTGCAACAGTGGCTGCTGCTCCTGCAAGAGGTGACCAGAGAAGACCAGTTGCAGCAGTCGCTAAAGCCACTGCAGCTGTGTCTCGAAGGCCAGGATGGGACCTGAAAGGCAAAGTCAGCGACATGGAGGCCAAAGTTCAGAACTATCAGAGCAAAGTAAAAACTGTAAATCAGGAAAACGAGTGTCTGAAAGACTCCATAGCCAAAGTCCAAAGACGCACCGCTGATATTGAACAGGAGAATAATGGTCTCAGAAGGCGTCTTGGCGATTGTGAAAAGGAGCTGGTGAAGCTGGCCACAGTAAAAGATGACCTGGAGCACACCACCAAAGAGAGAGATGGCCTTCAGAAAGACCTCAGCAAGCTGACAGAGGAGCACAAGGTTTTGGAAGGACTCCGAGATCATTTAGAGTCTGAGCTTCGCAACATACAGACTCAGCTGGCCATTCAGACCTCTGCGTTGGGCCGGTGTCAAGACAGTTTGAAGGAGAGCCAAGAACTGGCCAGGAACCTTGAGGAAACGGTGGCCCGTCAACGAGAAGAACTCCATCTCGGAGAAATGGAGCGAAGGAAACTCCACAACACCATTCAAGAGCTCAAAGGAAATATCCGAGTGTTTTGTAGGGTTCGGCCGCTGCTGACAGGAAATCAGTCTGATATTCTGCACATCCAGCTGCCTCCCCATGACAACAAGGCTCTCACTCTTGCCAAAATGGAAGAGTCTCACACAGGTCGCACCACTGACACACAGAAGAGCTATAACTTCAGCTTCGACCGTGTGTTTGGTCCTCGTTCTTCTCAGAGTGAGGTTTTTGAAGAGATTTCCCTGCTGGTGCAGTCTGCTCTGGATGGATACAACGTTTGTTGCTTTGCTTACGGCCAAACTGGCAGCGGGAAGACCTTTACTATGGAGGGGGGTGAACAGGAGGAATTGTGGGGGGTCATTCCACGCGCTGTCCAGCAAATCTTTAAATCCGCCAAAGCACTCAGTGAGCAAGGCTGGCAGTACTCTTTCACTGCCAGCTTTGTGGAGATCTACAATGAGACACTTCGAGATCTTCTCTACAAAGGCAAACCAAACAAGAGACCTGAGCACGAGATCAGGAAGGTGTCCAACAATGAGATCACTGTTACCAACCTGACCTACCAAAAAGTCAACAATGAGGATGAGGTGCACAACTTGATCATGTTGGCCAACCAGAACCGCTCCACAGCCCGCACGTGCATGAACGATCACTCCTCACGTTCTCACTCTGTGTTCCAGCTAGACATAGAAGGGGAAAACACAGCCAGAGACTCCAAGTGCAAGTCCATGTTGTGTCTGGTGGATTTGGCCGGTAGTGAGAGAGTGCAGAAGAGTCAGTCTCAAGGAGAGCGATTCAAGGAAATGACCGCCATCAACTCCTCCCTCACCAACCTGGGAATTGTAATCGCTGCTTTGGCCAACAAGGACAGCTTTGTTCCCTACCGTAACTCCAAGCTCACGTACCTCCTCCAGAACTGCCTCGGAGGCAACAGCAAAACTTTGATGTTTGCGAATATTTCACCTGAGGAAGAAAGCTTCAGTGAATCTCTGAATTCCCTGCGCTTTGCCAGCAAGGTGAACGACTGTGTCATCGGAACAGCTTCTGCTAACAAGAAGTAGCCTGGCTGTCATCTCCGAACATCCATTTTAATGCGTTTTTAACTTTTACCTGAACTTCAGTTATTCATTGTATATTCTCATCTCCCtccatattttatatttctgttaTGCTTTTTAATGTTCAGTCTCCCTGACAGAGTTTTAATGTTTTGCAACCATCAAAAGCATATTGTAATTCAACCTTTCAGTGATATCAATAAATGTTTCATGGCTTTGTAATGCAGTGGTGATTGTGATGCAAAGTGTAGACAGTTTTGGAAATGCATATGAAAATTGGTCATCTGTGTTTGTGAAAAATGCTAGTACAATTAAAAACAAGGTTACCATTATGTTGACCACTGTTTTAGTAagacatattttgtttttgtaaaaactattttagtataaattttgttgttttttaagtaaTAGTTCACAGTATGTGCATTTCGATGTATTTTGGATCAAACAAATGCATAAATGGTACATATAGAACCTGtacgtgtgtgtaaatgtttgctATATTTTATctatatgtttgtttgatttgtaaaGCATAGTATAGGAAATTTAACAAAGC

Function

symbol description
kifc1 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement and mitotic spindle assembly. Predicted to be part of kinesin complex. Predicted to be active in microtubule cytoskeleton and nucleus. Orthologous to human KIFC1 (kinesin family member C1).

GO:

id name namespace
GO:0090307 mitotic spindle assembly biological_process
GO:0007018 microtubule-based movement biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-000208-21 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement and mitotic spindle assembly. Predicted to be part of kinesin complex. Predicted to be active in microtubule cytoskeleton and nucleus. Orthologous to human KIFC1 (kinesin family member C1).

Ensembl:

ensembl_id ENSDARG00000001558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027633 False 912 mRNA 0.50 9 6990970 6994702
TCONS_00027634 False 2479 mRNA 0.46 17 6990970 7000522
TCONS_00027635 True 2555 mRNA 0.45 17 6990972 7000603

Neighbor

gene id symbol gene type direction distance location
XLOC_013821 NA coding upstream 1985 6987738 ~ 6988985 (+)
XLOC_013820 flot1a coding upstream 33566 6938289 ~ 6957404 (+)
XLOC_013819 si:ch73-367f21.6 coding upstream 56771 6928229 ~ 6934199 (+)
XLOC_013818 si:ch73-367f21.5 coding upstream 67280 6918135 ~ 6923690 (+)
XLOC_013817 si:ch73-367f21.4 coding upstream 74724 6910384 ~ 6916246 (+)
XLOC_013823 zbtb22b coding downstream 567 7001170 ~ 7007154 (+)
XLOC_013824 FP085393.1 coding downstream 34603 7035206 ~ 7035320 (+)
XLOC_013825 mhc1uka coding downstream 43031 7043634 ~ 7051481 (+)
XLOC_013826 mhc1uba coding downstream 72251 7072854 ~ 7101100 (+)
XLOC_013827 psmb12 coding downstream 114620 7115223 ~ 7119456 (+)
XLOC_013813 CR391908.1 non-coding upstream 363680 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 544661 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 584762 6383905 ~ 6406208 (+)
XLOC_013810 NA non-coding upstream 677466 6313208 ~ 6313504 (+)
XLOC_013832 FP101875.1 non-coding downstream 241514 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 244096 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 273980 7274583 ~ 7275354 (+)
XLOC_013837 FP085394.1 non-coding downstream 305864 7306467 ~ 7306563 (+)

Expression


Co-expression Network