XLOC_013823 (zbtb22b)


Basic Information

Item Value
gene id XLOC_013823
gene name zbtb22b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7001170 ~ 7007154 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027636
CGATGTCGGTCCACCATTACACTCGGCGTTCCTGCACGGTGGGAAACGGCGATTTAACACAATGAAAACCTCTCGTTTGAGTGCCTGACGGAGAAATTTAAATCGGAATGCAGTCAGCCACAGCGGACCAGACTTTTGTTGACTCCACGGGTTCGGTGGTGCAGGTGTGCTTCCCCAGAGCGCAGACCTCAGTTCTGGATAGCCTGAATCGTCAGCGCGAAGAAGGCCATCTCTGCGACCTCTCCATCCATGTTCAGGGCCAGGTGTTCAAGGCACACCGATGTGTGCTGGCTGCTTCATCCCCTTACTTCCATGATCAGGTGCTGCTGAAGAACATGTCCACTGTCTCCATCCCGGCCGTCATGGACCCTCTGGCCTTCGAGAGTGTCCTCAGCTGTGCATACACCGGCCAGCTGCGAATGCTTCGCGAAGACATCGTTAACTACCTCACTGTTGGCAGTGTGCTTCAAATGTGGCACATTGTGGACAAATGCACTGAGCTTCTCAAAGAGGGGAAGGGAGGTTCCAGTGGGCCTCAGGGATCCGGAGAGAAGGAGAACATAGGACAGGGCAGCGGCACCAACAAGGTGGCACAAGCAGACGGAGGAGAAGCACCTTCTACACCTCAACCTCCCAGCCGCCCCTCCTTCAGTGAGAGCCAGTCCCCAAGCAGCACCAATTACTTCAGTCCTAGAGACGCAAACTTTGGCGGAGCCATGGTGTCCACCATAGCAGTAGGAGAGGGTGCAGTACACTCCACCCCGTCCTACTGCATGCCCTCCGGTGGAGAAGAAGGTTTCATGATCGaagatgaagaagatgatgaCGATGAGTTGTTGTTTTCCAGGAAAAGAGATAGAGGAGGTAAGCAAAAGAGCACCTCCTCTGTGTCCGATCAAGAGGTTGGGGTGAGTGACAGCTTTGGTGTCTCGTCGTATCAAGACGGAGATTCCTCACCACCCCAGAAGCACCCATCGTACATTCAGCCAAGCATTATGCCCAGAAAACAGTGGGTGGTGGTGAAGACGGAGCACTCGAGAGATGATGACCTGATCGTGGTGTCAGGAGGAGAGGAAGGAGGCGACGATGAAGAGGAACGAGAGATGGCCATAGTCAGGGAGAGGGACAGGACATTTAACATATCCAATGTTAGGACCCTTTCTGGACTTAGAGAAGATGCTGAAATGGATGCACAGGTTGACTATTGTCAGTCCTCGGAAGACTACCTCAAATTTGAGAGGGGTATAATTGACCAAACATCCTCTCAACACCCTCCTGAGAACTCCAGTCAGTGCCCCAACAGGGCCATGTCTGGCATGCTCGGCTCGGTTCAGTCAACGTCTGCCAGAGCTCAACTCTTCCCTCTGGATATGCAAGGAAACCAGATTCTTCTGTACAATCAAGCTGCCCTGGAGTCTACGTCTCCATTAGGCCTCACAGGCGGAATGTCCGGGGTGTCTCTCAAAGGAAGTCTTGAACACGGAGCGGTCCACTTGCCTAGCCAAGGGGCTTTGGGTAGTGGTATGGAAGGCTTAGACGCCGGCTCTGCTGGCAGTTCAGGCAAGGTCTTCATGTGTCATTGTGGGAAGACGTTCACTCACAAGAGCATGCGTGACCGCCACATCAACATGCACCTGAACCTGCGGCCCTTCCACTGCCCTGTTTGTGCCAAGAAGTTCAAGATGAAGCATCACCTCACAGagcacatgaagacccacaccgGTCTGAAGCCCTATGACTGCCATGGCTGTGGGAAGAAGTTCATGTGGCGCGACAGCTTCATGAGGCATCGCTCGCACTGCGAGAGACGCGGCAGGTCGGAGAGAGCATCTGAGAGGTCAGTCATCTCTCCGCCACATCACCTGAAGCTTCCCTCAGCTAGTGAGCCCAATCAAGGTGGTGCCGGCGCTAGAAGTGGGCTTCCCATTTTGTCTCCGCAACATTCCATCAGCAGCAACGGCGTCTCCTGTCTTAGCATGGCTGCATCGGGGTCTCTTTTAGGAATGAGCTCTCAGAGTGGGTCGCACAGCCTTGGTTCTGGCATTCTGGGCATCGGTGGCAATCGTAGTGGGTGTGTTGAAGACGTCTGTGAGGAAAACGTTGACGAGAGCAGCGTCACATAAGAGGTGACCCCGCATGAGATGAGTGTCCCGCAACACCAGAGCACTTGTCTTTGGTTTAACAGGGACTACCATGCACAGTTGTCTCAATTCTTTACCTCATGTCGGTGAGTGCGCCATACAAGATGTCCCAcgtgtgtttaaaaataataccAATGACCAAGTGCCCATTGCTAGCTCACGTATGTATCTACTTAAAGTACAGGCTGCTATGGTGACTATCGAAACCATATCCAGGCCAGGAATATGGGAGGGTCGCCATCATTTTTAAAGCTGCCTCACTAGCACAGAACTTTTGTTCACTGTTGCTCTAAGTGCCATTCCGTTATGTTGTCCGATATTATGTTGTACAGAGGTGTACATTACTGTAACTCATTTGGTCCGCTCTTGATGTGAAGTTTTATTGTACTGTCAcaactatatacagtatgttcACTTTTAAATGTGTTGATCTGAAAAC

Function

symbol description
zbtb22b Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB22 (zinc finger and BTB domain containing 22).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010110-4 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB22 (zinc finger and BTB domain containing 22).

Ensembl:

ensembl_id ENSDARG00000003251

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027636 True 2580 mRNA 0.52 4 7001170 7007154

Neighbor

gene id symbol gene type direction distance location
XLOC_013822 kifc1 coding upstream 567 6990970 ~ 7000603 (+)
XLOC_013821 NA coding upstream 12185 6987738 ~ 6988985 (+)
XLOC_013820 flot1a coding upstream 43766 6938289 ~ 6957404 (+)
XLOC_013819 si:ch73-367f21.6 coding upstream 66971 6928229 ~ 6934199 (+)
XLOC_013818 si:ch73-367f21.5 coding upstream 77480 6918135 ~ 6923690 (+)
XLOC_013824 FP085393.1 coding downstream 28052 7035206 ~ 7035320 (+)
XLOC_013825 mhc1uka coding downstream 36480 7043634 ~ 7051481 (+)
XLOC_013826 mhc1uba coding downstream 65700 7072854 ~ 7101100 (+)
XLOC_013827 psmb12 coding downstream 108069 7115223 ~ 7119456 (+)
XLOC_013828 psmb9a coding downstream 113226 7120380 ~ 7122373 (+)
XLOC_013813 CR391908.1 non-coding upstream 373880 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 554861 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 594962 6383905 ~ 6406208 (+)
XLOC_013810 NA non-coding upstream 687666 6313208 ~ 6313504 (+)
XLOC_013832 FP101875.1 non-coding downstream 234963 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 237545 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 267429 7274583 ~ 7275354 (+)
XLOC_013837 FP085394.1 non-coding downstream 299313 7306467 ~ 7306563 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_05651284_05669061 KIFC1, ZBTB22B coding CI01000319 null 5651114 ~ 5671460 (+)