Fish Transcriptome and Expression Database

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model fish

XLOC_013824 (FP085393.1)

Basic Information

Item	Value
gene id	XLOC_013824
gene name	FP085393.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	7035206 ~ 7035320 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027637
GCCGGCAGTTAGCTCTCTGcgactctcacatggtcgcctactgaagctaaacagggctgcactcggtcagtacctggatgggagaccacatgtgaAAGCTAGGTTGTTGTCAGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000110523

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00027637	True	115	rRNA	0.54	1	7035206	7035320

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_013823	zbtb22b	coding	upstream	28052	7001170 ~ 7007154 (+)
XLOC_013822	kifc1	coding	upstream	34603	6990970 ~ 7000603 (+)
XLOC_013821	NA	coding	upstream	46221	6987738 ~ 6988985 (+)
XLOC_013820	flot1a	coding	upstream	77802	6938289 ~ 6957404 (+)
XLOC_013819	si:ch73-367f21.6	coding	upstream	101007	6928229 ~ 6934199 (+)
XLOC_013825	mhc1uka	coding	downstream	8314	7043634 ~ 7051481 (+)
XLOC_013826	mhc1uba	coding	downstream	37534	7072854 ~ 7101100 (+)
XLOC_013827	psmb12	coding	downstream	79903	7115223 ~ 7119456 (+)
XLOC_013828	psmb9a	coding	downstream	85060	7120380 ~ 7122373 (+)
XLOC_013829	tap2a	coding	downstream	89017	7124337 ~ 7132315 (+)
XLOC_013813	CR391908.1	non-coding	upstream	407916	6627173 ~ 6627290 (+)
XLOC_013812	NA	non-coding	upstream	588897	6440411 ~ 6446309 (+)
XLOC_013811	NA	non-coding	upstream	628998	6383905 ~ 6406208 (+)
XLOC_013810	NA	non-coding	upstream	721702	6313208 ~ 6313504 (+)
XLOC_013832	FP101875.1	non-coding	downstream	206797	7242117 ~ 7268026 (+)
XLOC_013833	NA	non-coding	downstream	209379	7244699 ~ 7249360 (+)
XLOC_013834	NA	non-coding	downstream	239263	7274583 ~ 7275354 (+)
XLOC_013837	FP085394.1	non-coding	downstream	271147	7306467 ~ 7306563 (+)
XLOC_013841	BX927401.3	non-coding	downstream	448897	7484217 ~ 7484331 (+)

Expression

Co-expression Network