XLOC_013825 (mhc1uka)


Basic Information

Item Value
gene id XLOC_013825
gene name mhc1uka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7043634 ~ 7051481 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027638
GAACAGAGTGCAGCTCAGGACACAGGCGGGGTTTCTCTATCTGCTCTGGAAAGAGGAAGTTTACTCTTCGGGATTTGTGAATGAAAGAAGATGGCTGACAGAATTACACAAATGCAAAAAATGGAGTACATACTGCTGCTGGTTGTCTGTCTACCTTATGTTGATGGTGcaACGCACACCTGGAATGCCTATTACACTGCAACAACTGGATTGAGTCAGTTTCCAGAGTTTGTGGCACAGAATCTCATTGATGGTCAGTTGATGGGGTACTTTGACAGCAAGACCAACTGCTTTAAGAGCCAATTTCAGTGGATGGAAGATAAACTTGGGACAGCATATGATGAGCAACAAACTAACATTCTACAGCGCCATACTGCAAAATTCAAGAACAACATTAAAGTTGCAATAGAGCGCTTCAATCAAACACAAGGTGTGCACACATTACAGGAAATTTACGGTTGTGAGTGGGATGATCAGACTGGAAATTTAAATGCATTCAGACAGTATGGATATAATGGAGAGGATTTCCTGACTCTGGATTTTATGGAGATGAGATGGATTACTCCAGTGCAGCAAGCAATGATCACCACACAGAAGTGGAACAATGACAGAGGCTTCATTGAAAGTGACATGAATTACTTCAGGTCTGAGTGCATTGAGTGGCTGCAGAAGTACTTGGAGTATGGAAAGAGCAGCCTGATGAAAACAGTCTCTCCTCAGGTGTCTGTGCTGCAGAAATATTATTTCTCTCCAGTTGTGTGTCATGCTACAGGCTTTTACCCCAGTGGAATAAAGATCTCCTGGCAGAAAAATGGACAAGATCATGATGAGGATGTGGAGCTTGGTGAACTTCTGCCCAATGCAGATGGAACCTTCCAGAAGCGCAGCACTCTCAATGTTAAACCTGAAGAGTGGAAGAACAGCAAGTTCAGCTGTGTGGTGGAGCATCAGGGGGAAAGAATTCTGACTGAAGACGAAATCAGAACTAACAATCCTTCTGCTACCATTGGCATCATCATTGGCATTGTACTTTCTGCTGTCCTACTGCTGTTTATTGCTGTTGCTGGGTTCGTGGTGTATTGGAAAAAGAAAGgcTTTAAACCTGTTCCTGCAAATcCTGTGAACTCTGACAATGACTCTGGCTGTGGCAGTGGATCAGACAGTGTTTCACACAAAAGCTCAGACAGTACATCAGACATCAGCTCTGTTTGCTCCGACAACAGCTCTGACAGCACCACAGCTTTATTACGAAACAGACAAAAATATGACAAAGAAAACTGAACCTGATAATGTTCTGACACTTGCATGCAGGTTTTGATAAATTTGGACATAGTTTAAggtagggg
>TCONS_00027639
ATGGAGTACATACTGCTGCTGGTTGTCTGTCTACCTTATGTTGATGGTGcaACGCACACCTGGAATGCCTATTACACTGCAACAACTGGATTGAGTCAGTTTCCAGAGTTTGTGGCACAGAATCTCATTGATGGTCAGTTGATGGGGTACTTTGACAGCAAGACCAACTGCTTTAAGAGCCAATTTCAGTGGATGGAAGATAAACTTGGGACAGCATATGATGAGCAACAAACTAACATTCTACAGCGCCATACTGCAAAATTCAAGAACAACATTAAAGTTGCAATAGAGCGCTTCAATCAAACACAAGGTGTGCACACATTACAGGAAATTTACGGTTGTGAGTGGGATGATCAGACTGGAAATTTAAATGCATTCAGACAGTATGGATATAATGGAGAGGATTTCCTGACTCTGGATTTTATGGAGATGAGATGGATTACTCCAGTGCAGCAAGCAATGATCACCACACAGAAGTGGAACAATGACAGAGGCTTCATTGAAAGTGACATGAATTACTTCAGGTCTGAGTGCATTGAGTGGCTGCAGAAGTACTTGGAGTATGGAAAGAGCAGCCTGATGAAAACAGTCTCTCCTCAGGTGTCTGTGCTGCAGAAATATTATTTCTCTCCAGTTGTGTGTCATGCTACAGGCTTTTACCCCAGTGGAATAAAGATCTCCTGGCAGAAAAATGGACAAGATCATGATGAGGATGTGGAGCTTGGTGAACTTCTGCCCAATGCAGATGGAACCTTCCAGAAGCGCAGCACTCTCAATGTTAAACCTGAAGAGTGGAAGAACAGCAAGTTCAGCTGTGTGGTGGAGCATCAGGGGGAAAGAATTCTGACTGAAGACGAAATCAGAACTAACAATCCTTCTGCTACCATTGGCATCATCATTGGCATTGTACTTTCTGCTGTCCTACTGCTGTTTATTGCTGTTGCTGGGTTCGTGGTGTATTGGAAAAAGAAAGGTGAGAAGAAATATTCTGTGAACTCTGACAATGACTCTGGCTGTGGCAGTGGATCAGACAGTGTTTCACACAAAAGCTCAGACAGTACATCAGACATCAGCTCTGTTTGCTCCGACAACAGCTCTGACAGCACCACAGCTTTATTACGTAAGtgtcttatatttatttattaa

Function

symbol description
mhc1uka Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-152 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space.

Ensembl:

ensembl_id ENSDARG00000092731

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027638 False 1346 mRNA 0.43 9 7043634 7051481
TCONS_00027639 True 1146 mRNA 0.43 6 7045033 7050622

Neighbor

gene id symbol gene type direction distance location
XLOC_013824 FP085393.1 coding upstream 8314 7035206 ~ 7035320 (+)
XLOC_013823 zbtb22b coding upstream 36480 7001170 ~ 7007154 (+)
XLOC_013822 kifc1 coding upstream 43031 6990970 ~ 7000603 (+)
XLOC_013821 NA coding upstream 54649 6987738 ~ 6988985 (+)
XLOC_013820 flot1a coding upstream 86230 6938289 ~ 6957404 (+)
XLOC_013826 mhc1uba coding downstream 21373 7072854 ~ 7101100 (+)
XLOC_013827 psmb12 coding downstream 63742 7115223 ~ 7119456 (+)
XLOC_013828 psmb9a coding downstream 68899 7120380 ~ 7122373 (+)
XLOC_013829 tap2a coding downstream 72856 7124337 ~ 7132315 (+)
XLOC_013830 brd2a coding downstream 101485 7152966 ~ 7170674 (+)
XLOC_013813 CR391908.1 non-coding upstream 416344 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 597325 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 637426 6383905 ~ 6406208 (+)
XLOC_013832 FP101875.1 non-coding downstream 190636 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 193218 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 223102 7274583 ~ 7275354 (+)
XLOC_013837 FP085394.1 non-coding downstream 254986 7306467 ~ 7306563 (+)
XLOC_013841 BX927401.3 non-coding downstream 432736 7484217 ~ 7484331 (+)

Expression


Co-expression Network