XLOC_013826 (mhc1uba)


Basic Information

Item Value
gene id XLOC_013826
gene name mhc1uba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7072854 ~ 7101100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027640
AAGAGGACAATCGCACTTGGGGATTTGTAAAGCAGAGAAGTAGTTCTTCTGAATCtcgtaaaaaacagaaaaaatgcaGTCGCTAATAGGTCTGCTGCTAGTCGTCTGTCTACAGTATGCTAGTGGTGCAACCCACAGCTGGAAAGCCTATTACACTGGAACAACTGGGTTGACTGAGTTTCCAGAGTTTGTGGCACTGAATCTCATAGATGATCAGTTGATGGGGTACTTCGACAGCAAGACCAACCGCTTTAAGAGCCAATTCCAGTGGATGGAAGATAATCTCGGGAAAGAATATGATGAGCAACAAACTAACATTCTACTGGGCTATCCTGAAGTATTCAAGAACAACATTAAAGTTGTGATGGAGCGCTTCAACCAAACACAAGGTGTTCACACCTTCCAGTTCATGTACGGCTGTGAGATGGATGATGATGGCAACAAACAAGTACATTGGCAGATTGGCTATGATGGAGAGGACTTCATCAGTTTGGATAAAAAAACGCTCACCTGGACTGCTGCTAATTCTCAAGCTATGACTACCAAGGTTAAATGGGATTCCACTGGAGCAGAGGCAAATTACTGGAAAGGATATCTGGAGAATGAATGCATTGAGTGGGTGCAGAAGTATGTGGGCTATGGGAAGGACACTTTGGAGAGAAAAGtctctcCTCAGGTGTCTCTGCTGCAGAAATCTTCTTCTTCTCCAGTCGTGTGTCATGTTACAGGCTTTTACCCCAGTGGTTTAAAGATCTCCTGGCAGAGAAACGGACAAGATCATGATGAGGATGTGGAGCTTGGTGAACTTATCCCAAATGAGGACGGAACCTACCAGAGAACGAGCACTCTGAATGTTAAACCTGAAGAGTGGAAGAAGGACAAGTTCAGCTGTGTGGTGGAGCATCAGAGCAAAACTATCAACAGTATTCTCACTGAAGACGAAATCAGAACTAACAATCCTACTGCCCCCCTTGGCATCATAATTGGCATTGTAGTCGCAGCTGTTCTGCTGGTAGCCATTGCTGTTGCTGGGTTTGTGGTCTATCGAAGACACAAAGGATTTAAGCCTGTTCCCCAAAACACATCTGATGGGGGATCAGACAACTCATCTCGTACATAAAGATATAAGTGTGGACCAGATGAATGCAAGAGATGaagctgaagaaaaaaagtgACATCCATCCTTCTCCTGCTGTCCATCTTGCATTGGAAGCTGCATAAACATGTAGAACATGTAGACAAATTTATCACGGATTAATCTTTTGGGATTCACTTTCTAAAAAGTTAATTTTCTTCACACTTTCTGTTCATCTTTAGTTTTGAGAAACATGGCAATGATTACCAAACCAAAAttacagatatatatttttattttgagactATGAAGAATGCAAGATTGCAAATTATTGATTTGGATGATTTGTAAAAACCTTTTTCATGTGTTTTAAAGAGATTTTCTTGGGGTAAAAGGGGGAAAAGCTGCTTACATGTAATTGAAAATGCTGTATTGTGCTTACCTGcttcaacatttaaataattttaaaatgatatattgatCACATTTAGTAGACCTTTTCCATCAGTTACATCAGATGACATGAtgtatttgcttttttatttcttgTAGAGGTTAATAGGTTTATTCTTCTTGCTGTTTGTTTCCTTCATTTTTGTTTCAAATGTTTTGAGGTGAAATGCTGTACTGCATAATAatagattatttttaaacaattgtaaatattgaactaaacttaaaTGTGTGAACAGTATAACACAAAATAGAATTGTTTCTTGTGGTTTGAGGTATCTACGTTTAAATTAAGTCAGGCTtacataaatatttgtttataaggGTTAACTTGTCATGTGCttttgattcttttaaaataaataaacctcacAAAAGA
>TCONS_00027641
CAATCGCACTTGGGGATTTGTAAAGCAGAGAAGTAGTTCTTCTGAATCtcgtaaaaaacagaaaaaatgcaGTCGCTAATAGGTCTGCTGCTAGTCGTCTGTCTACAGTATGCTAGTGGTGCAACCCACAGCTGGAAAGCCTATTACACTGGAACAACTGGGTTGACTGAGTTTCCAGAGTTTGTGGCACTGAATCTCATAGATGATCAGTTGATGGGGTACTTCGACAGCAAGACCAACCGCTTTAAGAGCCAATTCCAGTGGATGGAAGATAATCTCGGGAAAGAATATGATGAGCAACAAACTAACATTCTACTGGGCTATCCTGAAGTATTCAAGAACAACATTAAAGTTGTGATGGAGCGCTTCAACCAAACACAAGGTAAAAAATTAATAGGTAACAAATAATAGTAAAACAccagtaaataacatttaaaaatattgtgtgctacatgttaaaaaaatagtcagatctttttttttctatcaagcacatttaaaaaatagacattttaaacaaataagatAAAAGTCACATGCTAAAGTTAGGCTAAAGACATAAATAACCAAGATGTCCCCCACTAGCCAAGGAATAAAGATAGCATTAAAATGTGATCACAGTTGTAAAAGACCCATTACACTATTAACTCAAGTCTATTGTAACAAGAATACATGACCTGAACGAGACTGAAACAAAGATTGAGAAAGAGATGTTTCCTCAAGATCTTTAGTTTTCACTTTTAATGGAAGTTGCTGATCTAA
>TCONS_00027642
CTGAATCtcgtaaaaaacagaaaaaatgcaGTCGCTAATAGGTCTGCTGCTAGTCGTCTGTCTACAGTATGCTAGTGGTGCAACCCACAGCTGGAAAGCCTATTACACTGGAACAACTGGGTTGACTGAGTTTCCAGAGTTTGTGGCACTGAATCTCATAGATGATCAGTTGATGGGGTACTTCGACAGCAAGACCAACCGCTTTAAGAGCCAATTCCAGTGGATGGAAGATAATCTCGGGAAAGAATATGATGAGCAACAAACTAACATTCTACTGGGCTATCCTGAAGTATTCAAGAACAACATTAAAGTTGTGATGGAGCGCTTCAACCAAACACAAGGTGTTCACACCTTCCAGTTCATGTACGGCTGTGAGATGGATGATGATGGCAACAAACAAGTACATTGGCAGATTGGCTATGATGGAGAGGACTTCATCAGTTTGGATAAAAAAACGCTCACCTGGACTGCTGCTAATTCTCAAGCTATGACTACCAAGGTTAAATGGGATTCCACTGGAGCAGAGGCAAATTACTGGAAAGGATATCTGGAGAATGAATGCATTGAGTGGGTGCAGAAGTATGTGGGCTATGGGAAGGACACTTTGGAGAGAAAAGGTATGAATATTATTCGCTTTTATTGACCACTAGATAGTAAGCACTCATCATAACATTATCTACCTTTTAAGCTGGAAACTAAAAAGTTTCTTTAAGGTTTTGAAAATATGCATCTTTAATTTCTTCCTGCAGTATTAATTTTCTTGTTAATGATATTAATATGAAAACACTATGTAGTCTTTTacccaaaaaaaatttttatatgttataaaacaACTTATTTCTGTTCATGCTATTTTCTATACAGTACATCATCTGATCTAA

Function

symbol description
mhc1uba Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in liver and biliary system and pancreatic system. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); eye disease (multiple); human immunodeficiency virus infectious disease (multiple); and inner ear disease (multiple). Orthologous to several human genes including MR1 (major histocompatibility complex, class I-related).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-145 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in liver and biliary system and pancreatic system. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); eye disease (multiple); human immunodeficiency virus infectious disease (multiple); and inner ear disease (multiple). Orthologous to several human genes including MR1 (major histocompatibility complex, class I-related).

Ensembl:

ensembl_id ENSDARG00000075963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027640 False 1907 mRNA 0.38 8 7072854 7101100
TCONS_00027641 False 762 lncRNA 0.36 2 7072861 7074600
TCONS_00027642 True 881 lncRNA 0.38 3 7072902 7097857

Neighbor

gene id symbol gene type direction distance location
XLOC_013825 mhc1uka coding upstream 21373 7043634 ~ 7051481 (+)
XLOC_013824 FP085393.1 coding upstream 37534 7035206 ~ 7035320 (+)
XLOC_013823 zbtb22b coding upstream 65700 7001170 ~ 7007154 (+)
XLOC_013822 kifc1 coding upstream 72251 6990970 ~ 7000603 (+)
XLOC_013821 NA coding upstream 83869 6987738 ~ 6988985 (+)
XLOC_013827 psmb12 coding downstream 14123 7115223 ~ 7119456 (+)
XLOC_013828 psmb9a coding downstream 19280 7120380 ~ 7122373 (+)
XLOC_013829 tap2a coding downstream 23237 7124337 ~ 7132315 (+)
XLOC_013830 brd2a coding downstream 51866 7152966 ~ 7170674 (+)
XLOC_013831 hsd17b8 coding downstream 72513 7173613 ~ 7179694 (+)
XLOC_013813 CR391908.1 non-coding upstream 445564 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 626545 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 666646 6383905 ~ 6406208 (+)
XLOC_013832 FP101875.1 non-coding downstream 141017 7242117 ~ 7268026 (+)
XLOC_013833 NA non-coding downstream 143599 7244699 ~ 7249360 (+)
XLOC_013834 NA non-coding downstream 173483 7274583 ~ 7275354 (+)
XLOC_013837 FP085394.1 non-coding downstream 205367 7306467 ~ 7306563 (+)
XLOC_013841 BX927401.3 non-coding downstream 383117 7484217 ~ 7484331 (+)

Expression


Co-expression Network