XLOC_013831 (hsd17b8)


Basic Information

Item Value
gene id XLOC_013831
gene name hsd17b8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7173613 ~ 7179694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027651
AACAGGAGCTGCTGCTGGACACATTTATTCTTAGGAAGCAACAGCAATGGACTCTCTGAACGACAAATATGCAAGCAAAACCAGTTTGATGTAACATTTTTTACCAACTCTTTAGGAAAACGCAAAACGTGCAAAATACTTTTTCCCTTTTGTAACGTTCAATGTTAGCAAAGTCAGAAGGTCGCGACCATCCAGTGAAGTAATATATAAAGTATCAGCGGTCTTTCATTGACCTCTAGCGGACACATTGGgtactacactacactacagccCATCATGGCGGCGTCCACTCGACTCATATCCAGGTTGACGTTAGTCACGGgaggtGGCAGTGGTATTGGCAGGGCAGTCTGTCAGAGATTCGCCACTGAAGGTGCTTCTGTAGTAGTTGCTGACCGCAATGAGGAATCAGCCAATCAGACGCTGGAACTGCTGTCACGTGAGCACAGAGGTCAAGAGCACATGGCCCTTGGGGTGGACGTGTCTTCAAAGGACAGTGTGGAGAAGCTGGTGACCAGCATACAGCGCCGCTACTTCCAGCCTCcatcagtgtgtgtgaatgctgcCGGCATCACTCAGGATGAATTCATCCTCAAGATGGAGGAAGACGACTTTGACAAAGTCATTAAAGTCAATCTTAAGGGCACATTTCTGGTGACTCAGGCAGTCTCGAAGGCTTTAGTCTCTGCAGGGTCAGTGAAGGGCTCCATAATTACAGTGGGCAGTATCGTGGGCAAGGTTGGGAATATTGGCCAGGTGAATTACGCCTCTTCTAAAGCAGGAGTACAGGGACTCACTCGCACCGCCGCCAAAGAGCTGAGCAAGTTTGGTATTCGCTGTAACTGTGTGCTGCCGGGGTTCATCACTACACCCATGACTGATAAAGTCCCAGAGAAAGTCATCGATAAAATCACATCTATTATTCCACTGGGAAGAATGGGAGAGCCTGCTGAAGTAGCTGACGCCTGTGCGTTTCTGGCTTCTGATGACAGCCGATATATCACCGGAGTCAGCATTGAAGTTGCTGGCGGACTCTTCATTGGCTGAaaacagactgttgaatgtgacTCAATCGTGCCTTTACCTCAGTCAGAGtgtgtaaattgtattttaattgctGTAAAAACTGCGTACACAAtataacaaatgaaaaaaataaactctaTATTTATACAACTGAA
>TCONS_00027652
agccCATCATGGCGGCGTCCACTCGACTCATATCCAGGTTGACGTTAGTCACGGgaggtGGCAGTGGTATTGGCAGGGCAGTCTGTCAGAGATTCGCCACTGAAGGTGCTTCTGTAGTAGTTGCTGACCGCAATGAGGAATCAGCCAATCAGACGCTGGAACTGCTGTCACGTGAGCACAGAGGTCAAGAGCACATGGCCCTTGGGGTGGACGTGTCTTCAAAGGACAGTGTGGAGAAGCTGGTGACCAGCATACAGCGCCGCTACTTCCAGCCTCcatcagtgtgtgtgaatgctgcCGGCATCACTCAGGATGAATTCATCCTCAAGATGGAGGAAGACGACTTTGACAAAGTCATTAAAGTCAATCTTAAGGGCACATTTCTGGTGACTCAGGCAGTCTCGAAGGCTTTAGTCTCTGCAGGGTCAGTGAAGGGCTCCATAATTACAGTGGGCAGTATCGTGGGCAAGGTCAAGCATTTATAACATCGTCACAATGAGCATTTCACACTTTATACATCATGGAGTATTAATAAAGCATCAGTGCGTGCACACATTTGCACAGGGTCTCTTCAGAATCTCTTTCTCTGGCTGTAGGTTGGGAATATTGGCCAGGTGAATTACGCCTCTTCTAAAGCAGGAGTACAGGGACTCACTCGCACCGCCGCCAAAGAGCTGAGCAAGTAAGAGAGCACTTAACATcatgaaaatatttaaagatgggtggctcagtggttagcactgtcatctcacagcaagaaggtcgctggttcgagtactagtttttgggccagttggcatttctgtgtggagtttgcatgttctcctcctgttcccgagggtttcctctgggtgctccggtttcccccaacgGTGAGCCGTGATAAATCACAGACTGGTCGaaggggaaaatgaatgaataaaacttttaaatCCCTGCCGTTTTTTTTAACACTCTGGTCATTTTCTATTTTGCTGTAGTTTTTTTGGTTCTGCTTGTGTCTTATTTGCTGTAAACATGATGCTAATCACAATGAAAGGTtgtgtttttgtcattatttttattgtaatatattaatattaggtGTTGTGCCCGTCAGGTTTGGTATTCGCTGTAACTGTGTGCTGCCGGGGTTCATCACTACACCCATGACTGATAAAGTCCCAGAGAAAGTCATCGATAAAATCACATCTATTATTCCACTGGGAAGAATGGGAGAGCCTGCTGAAGTAGCTGACGCCTGTGCGTTTCTGGCTTCTGATGACAGCCGATATATCACCGGAGTCAGCATTGAAGTTGCTGGCGGACTCTTCATTGGCTGAaaacagactgttgaatgtgacTCAATCGTGCCTTTACCTCAGTCAGAGtgtgtaaattgtattttaattgctGTAAAAACTGCGTACACAAtataacaaatgaaaaaaataaactctaTATTTATACAACTGAA
>TCONS_00027653
AAGATGGAGGAAGACGACTTTGACAAAGTCATTAAAGTCAATCTTAAGGGCACATTTCTGGTGACTCAGGCAGTCTCGAAGGCTTTAGTCTCTGCAGGGTTGGGAATATTGGCCAGGTGAATTACGCCTCTTCTAAAGCAGGAGTACAGGGACTCACTCGCACCGCCGCCAAAGAGCTGAGCAAGTTTGGTATTCGCTGTAACTGTGTGCTGCCGGGGTTCATCACTACACCCATGACTGATAAAGTCCCAGAGAAAGTCATCGATAAAATCACATCTATTATTCCACTGGGAAGAATGGGAGAGCCTGCTGAAGTAGCTGACGCCTGTGCGTTTCTGGCTTCTGATGACAGCCGATATATCACCGGAGTCAGCATTGAAGTTGCTGGCGGACTCTTCATTGGCTGAaaacagactgttgaatgtgacTCAATCGTGCCTTTACCTCAGTCAGAGtgtgtaaattgtattttaattgctGTAAAAACTGCGTACACAAtataacaaatgaaa

Function

symbol description
hsd17b8 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process. Orthologous to human HSD17B8 (hydroxysteroid 17-beta dehydrogenase 8).

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0048038 quinone binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00061 Fatty acid biosynthesis
ko00140 Steroid hormone biosynthesis

ZFIN:

id description
ZDB-GENE-010110-1 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process. Orthologous to human HSD17B8 (hydroxysteroid 17-beta dehydrogenase 8).

Ensembl:

ensembl_id ENSDARG00000001169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027651 False 1181 mRNA 0.46 9 7173613 7179694
TCONS_00027652 False 1456 lncRNA 0.45 7 7173881 7179694
TCONS_00027653 True 512 nonsense_mediated_decay 0.46 7 7174703 7179665

Neighbor

gene id symbol gene type direction distance location
XLOC_013830 brd2a coding upstream 2939 7152966 ~ 7170674 (+)
XLOC_013829 tap2a coding upstream 41298 7124337 ~ 7132315 (+)
XLOC_013828 psmb9a coding upstream 51240 7120380 ~ 7122373 (+)
XLOC_013827 psmb12 coding upstream 54157 7115223 ~ 7119456 (+)
XLOC_013826 mhc1uba coding upstream 72513 7072854 ~ 7101100 (+)
XLOC_013832 FP101875.1 coding downstream 62423 7242117 ~ 7268026 (+)
XLOC_013833 NA coding downstream 65005 7244699 ~ 7249360 (+)
XLOC_013834 NA coding downstream 94889 7274583 ~ 7275354 (+)
XLOC_013835 ccdc127b coding downstream 112751 7292445 ~ 7295926 (+)
XLOC_013836 sqleb coding downstream 120171 7299865 ~ 7308253 (+)
XLOC_013824 FP085393.1 non-coding upstream 138293 7035206 ~ 7035320 (+)
XLOC_013821 NA non-coding upstream 184628 6987738 ~ 6988985 (+)
XLOC_013813 CR391908.1 non-coding upstream 546323 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 727304 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 767405 6383905 ~ 6406208 (+)
XLOC_013837 FP085394.1 non-coding downstream 126773 7306467 ~ 7306563 (+)
XLOC_013841 BX927401.3 non-coding downstream 304523 7484217 ~ 7484331 (+)

Expression


Co-expression Network