XLOC_013833


Basic Information

Item Value
gene id XLOC_013833
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7244699 ~ 7249360 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029870
ccctaatttacatttctatttttttttttaatgccaagtattttctgtattattctcacatattttattttatataaaggtCTGGCAGCTGAACTGCATGCGTACATTTCTTAGAGCATATAATAAGCTGACAACAGTACTGTATTAAAACCTTTACTTGCACATGGTACATCCAACAAAACAGATTCAGAATTAATGACAATAAAGcaaaaagaaagtttttttttctctttctccacACTCCGTACAGTCAATCCTTTCCACCACTGCTGGAGACAGATTTAAAAACTAGACAAGAAAAATGAAGAGGGAAGGTTGAGGATAGGGGGAAAAGACCCCAAATAACATAacagtttacactaatacatcagGATACACAAAGATGTAAAGCATAAGAAAAGAGCAGTCAGAAAACATACTGAGAAGcaatatttttgtgtgtttttttttcttttggtggGAGTAAATTAAGAAAGCTCTTTCAAGTCCGTAATCTCTTAAAGACTCCCAAAAACAATCACCATTTTCATCAGCCCACCCACTTGAAAGTACAAAATCATCTATTATGTAGCCCTCCTTCAGCTGTACATCTATCCAACACATTCCTATATAAAGGAAATCGCACAAAAACATGTCCATGTCACATTTCACcacaaaaccaacaacaacaaaatatttttgacaTAAGTTCACTTCAGTAATGCACTCccacatttaattattcattccaATTAATCTGAATAGTAATTTCCATTACTGTAGCTCAGCGATTTCAATTTGAATCAggataaataaaaacactttgcataaaaagtgaaaatgtgcaccTAATGAGATTTTACTTTGCAGTGAAGTATGACTTGGACACATtcttaaggtgtttacatgacagCCCTGagataaaaaaaaggaaatcttTTTCATTCCACccattttcaaaatgtttcacTCCAGAAATACAACCCTTCACGTTGATCAATAGCTGGTGATGTCTCTTTAAGAAGAAACAATACACACCTGTCGAGTTCTCTAGTCCGCCACTGTTGTTTTAATTGTACATGCTACATGACATCACTGTTTTATTTTACACAGAGGCGACGAAAATGGCATCATGTGCAAAAATGTGCGCTTTGAAAACAGTTTCACACTCTCAAATGAGGGTTTGATTAaagcagtggtgtccaaactcagtcctggagggccggtgtccagcatattttagttccaaccctaattaaacacacctgaaccagctaatcaagctctttctaggtataccagagttccaagcaggtgtgttgaagctaaGCTATTcaagacaccagccctccaggatcgagtttggacacccctggattaaagggatagttcacctaaaaattaaaattgcCATTATTCATCCTTCACGTTTCACCTGCTAAACACAAACTAAGAcagtgaagaatgttggaaacttgtagcCATTGAACTCCACAgtttttgattttattactatGAAGATcaactgtgtttaaaaaaaaaaaaactcaaatgtttagAACCACCTAAATGAGAGTAAAcgttcatttttgggtggactatccctttaaattacaGGTGCCCAAGGAGTttggctccaacttgcttcaacataactgccaggaagtttctagtacacccGGTAAAACCGTGATTAGCTTCAAGTGTGTCTAATtgtgttgaagctaaactctgcatgacaccggccctccaggactgacggctttaaatgaattgaaaaaaaaaatcgttttcATTTTTAGCCAACAGCGGTGTCATGTAAACACACGTTTTGTGTAATTCACCTGTGTGAACCCTCCTGACCTTCGCAAACGCTTCCCTCATATCTAACGCAGATCTGTCTTTACATATTCGCTGAAAAACCACAAACGAAGATCAAAGTCAATCAGCTCTCAGACTGTAACGTGCATAATAACCACTTCATTCTCAGGCGGAGATTCATTCAGTTTGCACTGTGCATATTTCAGAGCGCCACTTGGCTTCAAATACACACCCGGGAGGGCTTTTCCCCAACATGTGTGACAAATTGCAGCAACAAGGCCTTAAGAAAAAAATGCACCAACAGAACCCTCTGGATCTCTCTGTCTCTCAGCTGGGTATAAATAGTTGCATTAGGGGTTCTGTTTAGTGATCATCACAGTACACAGTCGACCAGTAGGGGTTAGTTAGGGGTCTCCCGTCGCACCTGTTTGGCAGTGCTGAATCAGTTCAGGTGCATTACGGATAACTGAAGCGTTACTGTCTGCTGTAACAAAACTGAAAATGGTACAAAAAAACCTGCGCaaggcttatatatatatattgttcatttCAATGAATGCTTTGCAACCCTAAACTAATTGAGAACTGTTAAAATGTGAGATTATGAAAGAGTTGAGAGGGTGGGGGGATAAAACCTGGACCCCAAAAGAGCTTACAGCGTATGTTTTTAGTAATATGTAGTCAAGCGAAAGTCGATTATGGCAAAAAGCAATCAAGTAATAGGAGATTGGGGCCATTGCACTCCATTTCAAGGAAATACAGTGAAGCGTTTCACCACTTTTGTATGCATCTTTCACATAGACAggacgcacatacacacacatacccaaATACACCTACCCCCGTAGGCTGACTGACAACTCTGCCAACACTCGAGTCACCTACGTGAAAGCACAAGCATACAGTGCACAATCAAATGACCTTCCCGCTGTTCCGGTACTGAGCAGACCATCATCGCCAACTGAATTAGCCTCAATTCCTGGATTTATGAAAACTGGGTGGACAAGCATGCAAGAACTCTTTGAGGAGGCTAAACTACTGGGAAGCCAAATTTACTGGACCAGAGGTCAGTTGTTAATCACATTAAAAAGACCAGTGGCCCAACCGAAAACACATGAGGAACAAGTCACAAAGAGGAAGTCTGGATTCAGTCAAATGTCAATGGCTAGCATTACGGAAAACAGTAAAACCCATCAATCCTGTGAACCATCTTACATGATGTACTGCATGATTATACTGGAAAATTAAGCACCTTACAGATGTAAAAAAACACTTCAGATAGCAATATCTGCATATAGCTGGATACTACAATTGATCGTCATGTAGAAGATGGTGTATTAAACAAGAAATTGGCATATCAAATTCAAGCTTATTGAAGAAATTGCATATTTTCACCACAGCTGTGCGTGTCTATTTTGGTGTCAACATTTGTGTCCAAGCGTTGTCATTTTTAGCACCAAAACAGGTGAAACCACTCAATCCATTCTTCTCTATAAAACCTTTAAATACTAGAGTAATTGAGAGTATTTGATCTCAAGTCTCTGCCTAAAAGTACTTTGTTTTATATGCCCATTGGTTTCTGTGGCTTAAACCAATGTTCCCACCATCAACACTGGTGCATTTGCTGGATCTTGTTCAATGGCCTGAATTCTCTCCCTGATGCATGATCTCGATCATTCTCGCATAAATGCATAGATGTTGTGACGGATGCTGGTTTTGACACTTCGCCCTTTCGCACCAACTGCACAACTCCCACAGAGCCCTGCACCCTCATTTCCTGCTGAATAAGACAAAATGGCCGTAGTTTTGAAGGAGGCGACCTGAACAGATGGAATGCAGAAATACATTATCTAGAACTTTTCAGATAGTTTAACAAAAACCGTGCATCACAAACCAAATCAGATTATCCAAACAAAACCAACTTGCACACACACTTGTGCCACAAAAACTGTGTTTTAAGATTGGCTCAAAATATCAAACAGGTCTCGATAATCAAAGACGTCTGTGCCAATCAAACACCAATTTTCCGTGCAATCAGTCAACTTTGACAACAATCTGCAGACTGTCGTTCTAATTCAGCAACAAGCATCGACTCCTCTAGTCTAGACTGTAGATAACCCAAATTAGGCAAAGTCATGTAATGCATCCCCAGCCTTTACACCAAATCAAGATCACTTTTTGTGGTTTTAATACGCCAAAGTTAGTACCAGTTAATTCCAAAGGAGCCTGATGACAATCACAAACGAAAATAGGCCTGCCGCGACTTGATTCGTACCAGCCAAAAGGCTTGCCGGATTCTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029870 True 4101 lncRNA 0.39 2 7244699 7249360

Neighbor

gene id symbol gene type direction distance location
XLOC_013831 hsd17b8 coding upstream 65005 7173613 ~ 7179694 (+)
XLOC_013830 brd2a coding upstream 74025 7152966 ~ 7170674 (+)
XLOC_013829 tap2a coding upstream 112384 7124337 ~ 7132315 (+)
XLOC_013828 psmb9a coding upstream 122326 7120380 ~ 7122373 (+)
XLOC_013827 psmb12 coding upstream 125243 7115223 ~ 7119456 (+)
XLOC_013834 NA coding downstream 25223 7274583 ~ 7275354 (+)
XLOC_013835 ccdc127b coding downstream 43085 7292445 ~ 7295926 (+)
XLOC_013836 sqleb coding downstream 50505 7299865 ~ 7308253 (+)
XLOC_013837 FP085394.1 coding downstream 57107 7306467 ~ 7306563 (+)
XLOC_013838 naxe coding downstream 158875 7408235 ~ 7412647 (+)
XLOC_013824 FP085393.1 non-coding upstream 209379 7035206 ~ 7035320 (+)
XLOC_013821 NA non-coding upstream 255714 6987738 ~ 6988985 (+)
XLOC_013813 CR391908.1 non-coding upstream 617409 6627173 ~ 6627290 (+)
XLOC_013812 NA non-coding upstream 798390 6440411 ~ 6446309 (+)
XLOC_013811 NA non-coding upstream 838491 6383905 ~ 6406208 (+)
XLOC_013841 BX927401.3 non-coding downstream 234857 7484217 ~ 7484331 (+)
XLOC_013862 NA non-coding downstream 712161 7961521 ~ 7965420 (+)
XLOC_013863 CR936442.1 non-coding downstream 716756 7966116 ~ 7968667 (+)

Expression


Co-expression Network