XLOC_013835 (ccdc127b)


Basic Information

Item Value
gene id XLOC_013835
gene name ccdc127b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7292445 ~ 7295926 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027655
AAAGTAGGGGGACTGCGTGGGTTCTCGTTATGTAGAAAACCGAAACAAACATGCTCTGACGCTCGGTGGAGTCACTGCAAATGTTATTGCATATACTGTAGCCCTCACACTTCAAGAAATCTATTATAAGTAAAAGTATAAGCATTGTTTACCCTTTGGGTTGTTGTATCGTGGAGGAGACTATTTGAATTAATTCGAGAAGGACAAGTGCTCTGAATGCTCGTGAGTCCACATGAATAACCTGAATGACCCTGACTGGAATATCAGGCCAGAGAGGCAAGGAGATGGAGGTGACAGCAGCAAGTGGAACTATGCCCTCCTGGTGCCTCTGCTGGGGCTCGCTGCTTTTCGATGGATCTGGTCCAAGGAGTCTGAGAAAGAAATCGAAGATGCCAAGGTCAAGTATGAAAACACTGTGAAGACAATCCAGAAGGACCTGGACGTCAAATACCGACAGACGCTTTCAGAAAACCGCAGGGAAACCGTTCAGCTGGAGCTTGATCTGGAGAAGGAAAAGCAGCGAGCACAAGGCTACCGACAAGCGCTGGCATCCCAGAGTCAGAAGCTCCAGGAGGAGCGTCGAGAACTCAGCCTGCAGCGGCAAGCTTTAGAAAACGAGAAATTAAGATTACTTCAAGAAGGACCTGGTGCTGCGCTCTTCCACTCGGCTCTGGAGAAGGAAAAAGAGCGCGAGCAGAGGACCACTTTGGCTCTGAAGCAAGTAGAATACGGCCTGGTGGAAAGACAGAGGGCCTTCTGCAGTATTTTGGTGCCCCGCGCGAGGAGGGTGGAGATGGAGAAGGATCTTCTGGTTCGTACGGCCAAAGAGCCTCTTCTTGCTCATCTGGAGATGGAGGATGGACTCAGGGATGTTTTTAAGAATGACCGCAGTTGCGCCGAGTATCTGAACACAAATGAACGCAAGAATGGCAGTCTGATGTGGCTTTATCTTAGATACTGGCAGACGCAGGTCACTCTTCAAACGCACCAGAGAGCCGAGGCTGCTGTACTCGGCATACAGACTAAAAAGTGACTTTAGTACAGAAAATTATGTATCTGAATTGATCCTATCTCAAATAAAGGTTT
>TCONS_00027656
GCTCTGAATGCTCGTGAGGTAATAAGACCTAGGTTATACCGACTTTTGATGTGACGCGAATATTGTGCTAGCATGATCAATTCCACATGAATAACCTGAATGACCCTGACTGGAATATCAGGCCAGAGAGGCAAGGAGATGGAGGTGACAGCAGCAAGTGGAACTATGCCCTCCTGGTGCCTCTGCTGGGGCTCGCTGCTTTTCGATGGATCTGGTCCAAGGAGTCTGAGAAAGAAATCGAAGATGCCAAGGTCAAGTATGAAAACACTGTGAAGACAATCCAGAAGGACCTGGACGTCAAATACCGACAGACGCTTTCAGAAAACCGCAGGGAAACCGTTCAGCTGGAGCTTGATCTGGAGAAGGAAAAGCAGCGAGCACAAGGCTACCGACAAGCGCTGGCATCCCAGAGTCAGAAGCTCCAGGAGGAGCGTCGAGAACTCAGCCTGCAGCGGCAAGCTTTAGAAAACGAGAAATTAAGATTACTTCAAGAAGGACCTGGTGCTGCGCTCTTCCACTCGGCTCTGGAGAAGGAAAAAGAGCGCGAGCAGAGGACCACTTTGGCTCTGAAGCAAGTAGAATACGGCCTGGTGGAAAGACAGAGGGCCTTCTGCAGTATTTTGGTGCCCCGCGCGAGGAGGGTGGAGATGGAGAAGGATCTTCTGGTTCGTACGGCCAAAGAGCCTCTTCTTGCTCATCTGGAGATGGAGGATGGACTCAGGGATGTTTTTAAGAATGACCGCAGTTGCGCCGAGTATCTG

Function

symbol description
ccdc127b Orthologous to human CCDC127 (coiled-coil domain containing 127).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-656 Orthologous to human CCDC127 (coiled-coil domain containing 127).

Ensembl:

ensembl_id ENSDARG00000008946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027655 False 1086 mRNA 0.48 3 7292445 7295926
TCONS_00027656 True 761 mRNA 0.51 3 7292654 7295747

Neighbor

gene id symbol gene type direction distance location
XLOC_013834 NA coding upstream 17091 7274583 ~ 7275354 (+)
XLOC_013832 FP101875.1 coding upstream 24419 7242117 ~ 7268026 (+)
XLOC_013833 NA coding upstream 43085 7244699 ~ 7249360 (+)
XLOC_013831 hsd17b8 coding upstream 112751 7173613 ~ 7179694 (+)
XLOC_013830 brd2a coding upstream 121771 7152966 ~ 7170674 (+)
XLOC_013836 sqleb coding downstream 3939 7299865 ~ 7308253 (+)
XLOC_013837 FP085394.1 coding downstream 10541 7306467 ~ 7306563 (+)
XLOC_013838 naxe coding downstream 112309 7408235 ~ 7412647 (+)
XLOC_013839 sf3b4 coding downstream 128421 7424347 ~ 7430858 (+)
XLOC_013840 mindy1 coding downstream 158070 7453996 ~ 7478597 (+)
XLOC_013824 FP085393.1 non-coding upstream 257125 7035206 ~ 7035320 (+)
XLOC_013821 NA non-coding upstream 303460 6987738 ~ 6988985 (+)
XLOC_013841 BX927401.3 non-coding downstream 188291 7484217 ~ 7484331 (+)
XLOC_013862 NA non-coding downstream 665595 7961521 ~ 7965420 (+)
XLOC_013863 CR936442.1 non-coding downstream 670190 7966116 ~ 7968667 (+)
XLOC_013865 BX545847.1 non-coding downstream 1003068 8298994 ~ 8299110 (+)

Expression


Co-expression Network