CI01000350_01860321_01869386 (PDK1)


Basic Information

Item Value
gene id CI01000350_01860321_01869386
gene name PDK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1859899 ~ 1870119 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000350_01860321_01869386.mRNA
CTATAAATGCAGTAAGAGGCCCAGTGTGCGCTGATGCTCTTGCGTATCAGATGAGTTCATACACACATGCTGCTGGAGTGCTTATCTCTCTTCACGCCCGTCAAGCATTACTCCGGGATTACCTGCATGTGTAGGGCCGTATCACATATATATAATGTTTGCAGTGCCATTACCGGGTAATACAGAACTCTATTTTCTGCAGAGATTTTCCAGACAGCCCTGGATTTACCCGGATCACTGATTTTGAATGAGTGAATCGCTGCATGTACGAACATGACTGACATTCAACTTCATACCACGAGAAACAAGTACGCAGTCTTCTGCTGATTATATTTTGGACAAGAAAATAATATGAGTTCAGAAAGCCAACAGGACACGTTTTTCTAGATTTTCTGAAGAACTAAACAGCAAAAGACGCCAATATGAGAATCTTCAGGACTTTGATGAACGCTGCATCTGTTTCCAAACAAATCGACTTTTACTCCAGATTCTCGCCTTCTCCTCTCTCTATGAAACAGTTCATAGATTTTGGTTCAGAGAATGCGTGTGAGAAAACGTCATTCACGTTTCTAAGACAGGAGCTGCCTGTCAGGCTGGCAAATATTTTGAAGGAAATAGATTTATTGCCTGATAACCTGCTGAGAACTCCTTCAGTGCGGCTGGTGCAGAGCTGGTACATGCAAAGTTTCCAGGATATACTTGATTTCAAGGACAAGGATATTGATGATCAAATGGTCACACACAACTTCACAGATGCTGTGATTAAGATCAGAAACCGCCACAATGATGTAGTGCCCACCATGGCTCAAGGAGTGGTGGAGTATAAGGAGACCTACGGCACCGACCCCATCACCAGCCAGAACATGCAGTACTTCCTGGACCGCTTCTACATGAGCAGGATTTCAATCAGAATGCTCCTGAACCAGCACACTCTTCTGTTTGGGGGAAAGGTGCGCGACAATCCTGCTCATCCCAAACAGATCGGCAGCATCGACCCCAGCTGTCGTGTCACTGATGTGGTCAAAGATGCTTATGAAAATGCCCGAAACCTGTGTGACCGGTATTACATGAACTCACCTGGCTTACTACTGGAAGAATTTAATGTTAAAGGACCAGATAAACCCATTGCTGTGGTGTATGTGCCGTCTCATCTGTACCACATGGTGTTTGAGCTCTTTAAGAATGCCATGCGCGCTACCATGGAACTTTATGAAGATGCCATGGAATATCCTCCAGTGCATGTTCAGATCGTCCTCGGCCATGAAGACTTGACTGTTAAGGTCAGTGATCGTGGAGGCGGAGTCCCATTGAGGAAGATTGACAGGTTGTTTACGTACACCTACTCCACTGCGCCTCGTCCTCAGATGGACACGTCTCGAGCCACTCCTCTGGCTGGCTATGGTTACGGGCTGCCCATCTCCAGACTTTACGCCAGATATTTCCAGGGTGACCTGAAGCTCTACTCTATGGAGGGATTCGGCACAGATGCCGTCATTTACATTAGAGCTTTGTCCACAGAGTCCATTGAGAGGCTTCCTGTTTACAACAAATCCGCCTGGAAACATTATAAAACCATCCACGAGGCCGATGACTGGTGTGTTCCCAGCAAAGAACCCAAAGACATGAGCACCTTCCGCAGCTTCTAGACTCGTCTCGCATCTTACACCAATGCACACGCTTCAGCAGCCCGAATAGATTCAAGCGTCTTACCTTCGTCTATCTGCTCTTGCGTAGATTCAGTATAGAAGAATAATGAAAGAGACAATATTATGAGCATGCTGAAACCCAACATGTTTCTGGTATGTTCTAATGAGAAAGTTGTGAACTGTTGCGGGTGGTACCAGTATTATAAGTTAGCTCAGGTGTTGCTAGTGCCATCACATCCCAGATAGACAATACTGCTGTTGCCGTTCTGGTGTATTTTGAGTGCGTGTTACTTGAGTGAGATCCAGTGTGTTTTCCTGCTCATATATTTGAATGTGTAAGTCAGTATATATTTATTTATCTGTCATCGTGAGATAGACAGTAATGCTGATCATTTTTGCTTTAAATTGTTATATGTTGTGGTTTGGGAGCTCGAGCTCATGTACCAGCATAACTGGGACTTCACATTCCTTGTACTGTCCCATGTGTTACATTTTGTTTTCAGAGCCAGTCTAAAGAAAGATGCTTTTTTTTCTTATAAGAAGTTGTGTAGCGTGAAGAGTTTTAAAGTGTTAAATGCTTCACACCACCAGAAAATGTTCAGCTTCAGCTATGTAACTTTTCAGGCTCTTAAGTGACAAAAAAAAAGGAACAAACGCATGTACATGTGAATCATGTGCTTCCCTTGATGGGGTGTAACAAGAGTGTTCAGTAGTTTGAAACTCATTCTGTTCA

Function

symbol description
pdk1 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK1 (pyruvate dehydrogenase kinase 1).

GO: NA

KEGG:

id description
K12077 PDK1; pyruvate dehydrogenase kinase isoform 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000350_01860321_01869386.mRNA True 2379 mRNA 0.44 11 1859899 1870119

Neighbor

gene id symbol gene type direction distance location
CI01000350_01748423_01750654 NA coding upstream 108843 1748423 ~ 1751056 (+)
CI01000350_01625265_01628425 DLX2A, DLX2 coding upstream 231275 1625143 ~ 1628624 (+)
CI01000350_01583582_01585575 NA coding upstream 273935 1583483 ~ 1585964 (+)
CI01000350_01454880_01462490 NA coding upstream 397409 1454563 ~ 1462490 (+)
CI01000350_01374131_01407038 NA coding upstream 452861 1373797 ~ 1407038 (+)
CI01000350_02051537_02098878 ZAK coding downstream 181418 2051537 ~ 2099018 (+)
CI01000350_02100526_02105123 CDCA7A coding downstream 230407 2100526 ~ 2105265 (+)
CI01000350_02225123_02231703 NA coding downstream 354928 2225047 ~ 2232060 (+)
CI01000350_02326331_02328418 SP9 coding downstream 456212 2326331 ~ 2328925 (+)
CI01000350_02342610_02352568 SCRN3 coding downstream 472491 2342610 ~ 2353306 (+)
G507915 NA non-coding upstream 38256 1819526 ~ 1821643 (+)
G507913 NA non-coding upstream 40446 1817797 ~ 1819453 (+)
G507864 NA non-coding upstream 90293 1768150 ~ 1769606 (+)
G507833 NA non-coding upstream 167472 1691531 ~ 1692427 (+)
G507847 NA non-coding upstream 196903 1662691 ~ 1662996 (+)
G507939 NA non-coding downstream 40224 1910343 ~ 1923325 (+)
G508031 NA non-coding downstream 302447 2172566 ~ 2172808 (+)
G508033 NA non-coding downstream 305457 2175576 ~ 2175836 (+)
G508034 NA non-coding downstream 305814 2175933 ~ 2176152 (+)
G507961 NA non-coding downstream 308037 2178156 ~ 2179980 (+)
G507699 NA other upstream 340071 1515709 ~ 1519828 (+)
G506858 NA other upstream 881008 978091 ~ 978891 (+)
G506911 NA other upstream 1093788 765310 ~ 766111 (+)
G506786 NA other upstream 1359143 499096 ~ 500756 (+)
CI01000350_02387606_02388868 NA other downstream 517504 2387560 ~ 2388902 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037586 pdk1 coding NC_007120.7 CM002893.2 3135062 ~ 3149896 (-)