CI01000350_02100526_02105123 (CDCA7A)


Basic Information

Item Value
gene id CI01000350_02100526_02105123
gene name CDCA7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2100526 ~ 2105265 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000350_02100526_02105123.mRNA
TCCGACGTGTGTCGGTTTTATTTGGAGTATTTGCTGGACTCTCGTTCTTCATTAACGGTATGAATATTGTACAGAGGCTGCAGGCGTCTCCACCCTCCACCAGGATGAACCTGCGCAGTTACAGGAGCACTGCTGTGGTTCCCATGGAAACCTCCTCTTCCTCCTCGGATGACAGCTGTGACAGTTTTGGATCCGATGGTTTTGGGAACTCGAAGAGACCACTGAGACAGACGAGAAGCTCGGCTCAGATTGAGAAAGTGTTTAACGTTCTCCCTGTGACTGAGGAAGAGGACGCGTGCAGCGGTTTTGAGAACGACCTGAACGATGACATGACTGAAATGAAAATGGACTCCGACGCTGAGACCTGTTCACCTCCCAGAAAAACTCGCAAATCATTCACGCTCCGAGTAGCCATGAAGTTCCCGAACAAACGGGCCAGTCCGTCAAAGCCGGTGACACCCGTGTCCAAACCCAAACCTAAACCTGAACCCAAACCCAAAGACCCAGAGCCTGACTCTGAGAGTGACAACTTCATGCTGAAGAGAGCGCTGAACATTAAAGAAAACAAAGCTATGCTTGCTAAACTGATGGCAGAGCTGGATAAGGTTCCTGGACTCTTTCCTGGGAAGGCTGCTTTGTCACAGGGCAATACGCCTCGTCGTGTTCCACGCCGCTCTTTGGACCCCAATGCAGCTCGGCGGAGAAACCCCGAGCGAACGTCCCGCCCTCACACCCGTTCACGCTCGCTGGTAGATGGACCACCCTCCCCCCCTCCAGAGGATGAACCCGAGGACAAATACAGCCTGGTTCGCAAAAACAGAAGTGACGACGATGATGAGGAAGAGAAAGAACCACGGCGGCGCAGTTATAACAGCACTCTGACGATTCCTCACGTCGTGAGGCCTGTGGAGGATATCACTCAGGCTGAACTGGACAACATCTGCGTCAACGTCAGAGAGAAGATTTACAACCGTGCCACCGGTTCCACCTGTCATCAGTGTCGCCAAAAAACAACTGACACCAAGACCAACTGCCGCAACCCAGAATGCGTGGGTGTTCGCGGACAGTTCTGCGGGCCTTGTCTCAGGAACCGCTATGGAGAAGAGGTCCATGATGCCCTCCTGAACCCGGAGTGGCTTTGCCCACCGTGCAGGGGCATCTGTAACTGCAGTTTCTGCCGTGCCAGAGAGGGGCGCTGTGCTACAGGTGTGCTCGTGTACTTGGCCAAGTACCATGGCTATGACAATGTCCACTCCTATCTCAAAAGTTTAAAGAAGGAACTGGAGGAAAGTGAATAAAATGGTCGCCATGTTTTGCGGGGTCCAACCAGAACTGACATCGTCCTCAAGTGTCTTAATCGTTGACGTGATTCACAGAGCTTCCTTAAACCTGCTGCAGGTTCATTTTGAGTAGACCGTTGGGAGTCTACATGAAATCTTA

Function

symbol description
cdca7a Acts upstream of or within regulation of hematopoietic stem cell differentiation and thymus development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; neural tube; thymus; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 3. Orthologous to human CDCA7 (cell division cycle associated 7).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000350_02100526_02105123.mRNA True 1440 mRNA 0.52 9 2100526 2105265

Neighbor

gene id symbol gene type direction distance location
CI01000350_02051537_02098878 ZAK coding upstream 1508 2051537 ~ 2099018 (+)
CI01000350_01860321_01869386 PDK1 coding upstream 230407 1859899 ~ 1870119 (+)
CI01000350_01748423_01750654 NA coding upstream 349470 1748423 ~ 1751056 (+)
CI01000350_01625265_01628425 DLX2A, DLX2 coding upstream 471902 1625143 ~ 1628624 (+)
CI01000350_01583582_01585575 NA coding upstream 514562 1583483 ~ 1585964 (+)
CI01000350_02225123_02231703 NA coding downstream 119782 2225047 ~ 2232060 (+)
CI01000350_02326331_02328418 SP9 coding downstream 221066 2326331 ~ 2328925 (+)
CI01000350_02342610_02352568 SCRN3 coding downstream 237345 2342610 ~ 2353306 (+)
CI01000350_02387606_02388868 NA coding downstream 282295 2387560 ~ 2388902 (+)
CI01000350_02502767_02507641 BZW1, BZW1B coding downstream 396761 2502026 ~ 2507641 (+)
G507939 NA non-coding upstream 177201 1910343 ~ 1923325 (+)
G507915 NA non-coding upstream 278883 1819526 ~ 1821643 (+)
G507913 NA non-coding upstream 281073 1817797 ~ 1819453 (+)
G507864 NA non-coding upstream 330920 1768150 ~ 1769606 (+)
G507833 NA non-coding upstream 408099 1691531 ~ 1692427 (+)
G508031 NA non-coding downstream 67301 2172566 ~ 2172808 (+)
G508033 NA non-coding downstream 70311 2175576 ~ 2175836 (+)
G508034 NA non-coding downstream 70668 2175933 ~ 2176152 (+)
G507961 NA non-coding downstream 72891 2178156 ~ 2179980 (+)
G507974 NA non-coding downstream 74907 2180172 ~ 2180438 (+)
G507699 NA other upstream 580698 1515709 ~ 1519828 (+)
CI01000350_01454880_01462490 NA other upstream 638289 1454563 ~ 1462490 (+)
G506858 NA other upstream 1121635 978091 ~ 978891 (+)
G506911 NA other upstream 1334415 765310 ~ 766111 (+)
G506786 NA other upstream 1599770 499096 ~ 500756 (+)

Expression


Co-expression Network