G506655


Basic Information

Item Value
gene id G506655
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 162639 ~ 166302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU580905
TAGCGGATGACTGTAAGAGCTCCACCGACTGCGGGTAACAGCTGAGATAACAGATACTGTCCGAGCGCCATCAAAACAACCTCATGCTCGTAACCACACATTTTATCGTCATTGGCGTAGTATCAGCGGTGGTTTTGATTGTTATCATCATCGCCCTCACCTGCTGCTGCTTTAAGTAAAAATGGAAATAGTGTATCAGATCTCCAGTAAGACTGCACCTTATTGGATGCAGATTATACCGTGGATGTGTTTTAGTCATAGTTATTAAAGCCATTTTTAAAATTCTTGAATATGTCTCATTTTCAATTTGTCCTTTCAGTTTGGTTTTTGTTCAGTGACAGTTTTACTTTATTTAGTGTATTCTTTCAGTTTTGTTGATGTTTTTTCCATTATATTTAGTTCGTGTTTTAGAGCTGCCAAAGTTAACAGTGTTAAATGTAAATCTAGTGGCATGTTTAATGCAGGTGGATTGATTGTAAATGTTCCAAATTGTACGGATTAATATACTGTGTATCAAAGACTACAATTAACTCATGGTCAGCTTTATTTTTGTTAGTTTTGTTGGTTAATGTGGTTGAGTTTCAGCTTTTTTCCAATTTTCATAGTTTTCACTAACAGTGAAATGTTCACAGATATTTTAAATGTCTTGGACTTCTACACAAAACCTGCAAACAGCCATAGTTCTGTTTAAAGGAAGTGTGAACAAGTTTTCTGTTGAGTTTATTCTTTTTAAGGTCTAAAATGCAACTGGAACTGAATGTGAGAAAGATTTCCCACAGTTCTGTCACGAGTGTTCAACACTGGATCCCCGACTGCTGAAATAAAAGAGAAATGATCTCCAGCGCTTCTATTGTTGATATTCATCTAATAGTAATAGAGTATTTTAGATATTTCACTCTTTCTGCATTTGAATATTTTTAAATGCAGTGTAAACTTTTTGCCCTTAATTTAAAAAAAAATAAATAAAAAATAGAGAGACAGATTATTTTTACTGTTTTGAATATGATGTTGAGTATATATTGTGAAAATGATCCCACAGTACATTTTCTAGAAATCCTATTTTTGATATACCTTGGAACTAAATGACCATATTTATTTACTACGGTAATGACAGGTTAGTCCAAAACACTAGACATGGACTACATCAACACTGCATTCAAGAGTATGAACTAGGGTAAACGTACCTATTAAGCTCACCAAAATCTACATTGAGACATTTTTAGTGCACAGGATATTGGTTTCAGTACAAGATGTTAAAATAAAATAAAATATTAATCTCTCACACAATAATAATTAATTTTATTTTAAATGACAAAAGCATTTCAATTAAGATGTACATCATTAAATGCAAAAAGTCTGTCTGTGTTTAATGGGTACATTTTTGTACCCTTTAAGCACACCGCTGTTGCCATTAAGCTCACAACATGTTTTATTAAAAATTCTTGTTTAGTTTAAACAACCTTTTTAAAGAATTGAAAAATGTTTCATTTGAAGGTACAGAGTCAATCGCAAAAAAAAATAAAAACAGAACACTAAAATCAAGCAACAAGGCATTCAATTTGATCAGTTATATATTCTAATTCGTGACCGGTGTTTTGCTTTGCTCTCTCCTCTGCGCTTCCGCGTTCGTCATTACGTCATGCGTCAAGTCAAGAGTTCACTCTTTGCTGTAAATCGATGTGTACGGCCGTCTGTCGGAAGCTAGTTATTTTAGTTTGTAAAGTTTTTAATATGGATATTTTTTTCTAACACAAATGCATCGCTTTGCTTAAGAAGGCCTTTATTAACGCCCGGAGCCGTGTGGATATTGTTTATGATGGATGCACTTTTCTAGGATTCAAAATCTCATCCTCTATTTACTGTCATTATAAAGCTTGGAAGAGCCAGGACATTATTTAATACCAAAAATGTTAATATAACTCCGACTGTACTAGTCTGAGGACACACCTAAGATAGCTTGATGGTCAGTAAATCATGGGGTAATTTTTATTTTTGGGTGAACTAACCCTTTAAGGCTGTGAAAAGAAGTTATTAATCATTTTATAAAGATTAACTTAAAGTGACAACCATCAGTTAATATTTAAAGTCTGTTTATGAAGTATTTACATAGATGTTTAATGTGGATGATCTTAAAGGGAGCACACTGAGCTTAACTGGAGCAGCAACAATTTTTAATTAATAAATATTACATTAAATTTAAAGGACAAGATTTTGTTAAATAAATAATCTAGGTCATGTATTAAGTTTATACATATTTTAATATCAACAACTATTATTGACAATATCTATGAAATTATACTTTTTCTTACTGATGTCACACTGAAGCTGTGTGATTTTCACAGTAGTGCACCCTTTAAGCTCGCCTAACAATAATATGAAGTCTTTAAAAATTGCAGCAGTGTAAAACCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU580905 True 2411 lncRNA 0.33 3 162639 166302

Neighbor

gene id symbol gene type direction distance location
CI01000350_00146107_00147209 NA coding upstream 15364 145916 ~ 147275 (+)
CI01000350_00140280_00143769 NA coding upstream 18835 140153 ~ 143804 (+)
CI01000350_00133984_00139525 CLDN10B coding upstream 22675 133984 ~ 139964 (+)
CI01000350_00110973_00120683 NA coding upstream 41956 108898 ~ 120683 (+)
CI01000350_00095230_00102190 NA coding upstream 60065 95230 ~ 102574 (+)
CI01000350_00249103_00250406 NA coding downstream 82801 249103 ~ 250628 (+)
CI01000350_00260761_00261744 NA coding downstream 94327 260629 ~ 261809 (+)
CI01000350_00266537_00276376 NA coding downstream 98970 265272 ~ 276791 (+)
CI01000350_00277505_00278977 NA coding downstream 110871 277173 ~ 279752 (+)
CI01000350_00299478_00304914 NA coding downstream 132960 299262 ~ 305567 (+)
G506679 NA non-coding upstream 11980 150274 ~ 150659 (+)
G506678 NA non-coding upstream 36916 125482 ~ 125723 (+)
G506680 NA non-coding downstream 11488 177790 ~ 181043 (+)
G506686 NA non-coding downstream 17351 183653 ~ 183956 (+)
G506688 NA non-coding downstream 20706 187008 ~ 187218 (+)
G506689 NA non-coding downstream 23304 189606 ~ 189885 (+)
G506690 NA non-coding downstream 30423 196725 ~ 205705 (+)
G506786 NA other downstream 332794 499096 ~ 500756 (+)
G506911 NA other downstream 599008 765310 ~ 766111 (+)
G506858 NA other downstream 811789 978091 ~ 978891 (+)
CI01000350_01454880_01462490 NA other downstream 1288261 1454563 ~ 1462490 (+)
G507699 NA other downstream 1349407 1515709 ~ 1519828 (+)

Expression


Co-expression Network