XLOC_013845 (s100a11)


Basic Information

Item Value
gene id XLOC_013845
gene name s100a11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7567763 ~ 7570475 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027672
TGACACTCCAGCCAGAACATCACTCGTGCGCTCAGCCTCATCTTTAACTCTACATCTCCCAGAATCATGGAATCTGCCATTAATGTGCTTGTCTCTGAGTTCAAGGCTTATGCTGGGAAGGAAGGTTCAGCAAGTACTCTGAGTAAAGAAGAGTTTACAAGCTTGGTCAAATCCCAGTTACCAAACTTTGTAAAGAATTCATCTGATCCAGCCACCATTGACCATCTCATGAGCTCATTGGATGCGAATAATGATGGGCAGCTGACGTTCATGGAGTTCTGGAATCTGATTGGCAATGTTGCAAACAAGCATGGTGGATTCTAAGCCAATCAAGAGACATTGAAGTTGTACTTTTAATTTTACCTTGTGACTTTCTGCTGTAATTCTATAACCTGTTGCACAGTTAATGATTGTCCTAAGCAGGTGAtggcaaataaaataaagcattgttTCTCAAGGTAA

Function

symbol description
s100a11 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; hematopoietic system; integument; olfactory epithelium; and pericardium. Orthologous to human S100A11 (S100 calcium binding protein A11) and S100A13 (S100 calcium binding protein A13).

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070717-5 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; hematopoietic system; integument; olfactory epithelium; and pericardium. Orthologous to human S100A11 (S100 calcium binding protein A11) and S100A13 (S100 calcium binding protein A13).

Ensembl:

ensembl_id ENSDARG00000093628

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027672 True 462 mRNA 0.41 3 7567763 7570475

Neighbor

gene id symbol gene type direction distance location
XLOC_013844 pbxip1a coding upstream 534 7549854 ~ 7567229 (+)
XLOC_013843 prcc coding upstream 27669 7506380 ~ 7540094 (+)
XLOC_013842 mrpl24 coding upstream 61629 7495791 ~ 7506134 (+)
XLOC_013841 BX927401.3 coding upstream 83432 7484217 ~ 7484331 (+)
XLOC_013840 mindy1 coding upstream 89166 7453996 ~ 7478597 (+)
XLOC_013846 s100u coding downstream 4666 7575141 ~ 7591062 (+)
XLOC_013847 s100s coding downstream 25449 7595924 ~ 7609286 (+)
XLOC_013848 pygo2 coding downstream 56595 7627070 ~ 7633062 (+)
XLOC_013849 cgnb coding downstream 66466 7636941 ~ 7680056 (+)
XLOC_013850 tuft1b coding downstream 146974 7717449 ~ 7750195 (+)
XLOC_013837 FP085394.1 non-coding upstream 261200 7306467 ~ 7306563 (+)
XLOC_013834 NA non-coding upstream 292409 7274583 ~ 7275354 (+)
XLOC_013832 FP101875.1 non-coding upstream 299737 7242117 ~ 7268026 (+)
XLOC_013862 NA non-coding downstream 391046 7961521 ~ 7965420 (+)
XLOC_013863 CR936442.1 non-coding downstream 395641 7966116 ~ 7968667 (+)
XLOC_013865 BX545847.1 non-coding downstream 728519 8298994 ~ 8299110 (+)
XLOC_013866 NA non-coding downstream 852437 8422912 ~ 8424378 (+)
XLOC_013870 NA non-coding downstream 1103207 8673682 ~ 8677972 (+)

Expression


Co-expression Network