G506807


Basic Information

Item Value
gene id G506807
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 570276 ~ 570843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU581133
TGCATCCTGAAAAAAGTGTCACAGGTTCCAAATAAATATTAAGCAGCACAACTGTTGTCACGCGGCTTGCTTGCCATAGATACAAGAGAGCACACAATGACGAAGATAATCCAAACAAGTGATATGAAGATGAAGAGTTCACACACACACACACACACACACACACACAGAGTAACACATACATTCACCGAACAGAACAGGGAGTTGTTATAAGGGCACTAATGAGGGAGGACACAATCAGGGAGAACAGAAACACAAGCAAATGGTTAATTAATCAAGAGACATAATGAGAGCAAATGAACTGAACAAGACATGACAGAATCTAGATGAAAACATAAAAGTCCAAAACTGTTACAACTGTTTACAACATTGATAATAACTGAATATCAGATCGTTATATTAGAACGATTTCTGAAGGATCATGTGACTAAAGATTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTATATTTTAAATTAGGCCTATATTTTAATAGAAAGCCATTATTTTAAATTGTAACAAATTTCTGTAAAAGTTTTTTTGCACTATTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU581133 True 568 lncRNA 0.34 1 570276 570843

Neighbor

gene id symbol gene type direction distance location
CI01000350_00457534_00503845 NA coding upstream 66311 457057 ~ 503965 (+)
CI01000350_00361432_00364007 NA coding upstream 206198 361432 ~ 364078 (+)
CI01000350_00324715_00343520 MAP3K12 coding upstream 225998 324715 ~ 344278 (+)
CI01000350_00299478_00304914 NA coding upstream 264709 299262 ~ 305567 (+)
CI01000350_00277505_00278977 NA coding upstream 290524 277173 ~ 279752 (+)
CI01000350_00586494_00587461 NA coding downstream 15651 586494 ~ 587683 (+)
CI01000350_00825304_00827619 NA coding downstream 254461 825304 ~ 827675 (+)
CI01000350_00856394_00860868 NA coding downstream 285551 856394 ~ 861076 (+)
CI01000350_00887155_00896486 NA coding downstream 316274 887117 ~ 898009 (+)
CI01000350_01039300_01048692 NA coding downstream 467310 1038153 ~ 1048845 (+)
G506775 NA non-coding upstream 7649 475125 ~ 562627 (+)
G506760 NA non-coding upstream 178351 391711 ~ 391925 (+)
G506752 NA non-coding upstream 195978 373916 ~ 374298 (+)
G506704 NA non-coding upstream 221122 242446 ~ 349154 (+)
CI01000350_00260761_00261744 NA non-coding upstream 309403 260629 ~ 261809 (+)
G506804 NA non-coding downstream 319 571162 ~ 571997 (+)
G506805 NA non-coding downstream 1309 572152 ~ 572617 (+)
G506855 NA non-coding downstream 123208 694051 ~ 694882 (+)
G506867 NA non-coding downstream 135076 705919 ~ 707274 (+)
G506906 NA non-coding downstream 178975 749818 ~ 758214 (+)
G506786 NA other upstream 69520 499096 ~ 500756 (+)
G506911 NA other downstream 194467 765310 ~ 766111 (+)
G506858 NA other downstream 407248 978091 ~ 978891 (+)
CI01000350_01454880_01462490 NA other downstream 883720 1454563 ~ 1462490 (+)
G507699 NA other downstream 944866 1515709 ~ 1519828 (+)
CI01000350_02387606_02388868 NA other downstream 1816780 2387560 ~ 2388902 (+)

Expression


Co-expression Network