Gene
RNA
| Item | Value |
|---|---|
| gene id | G506964 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000350 |
| NCBI id | null |
| chromosome length | 2572209 |
| location | 880344 ~ 881175 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU581307 | False | 572 | lncRNA | 0.39 | 2 | 880344 | 881175 |
| TU581308 | True | 572 | lncRNA | 0.39 | 2 | 880344 | 881175 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000350_00856394_00860868 | NA | coding | upstream | 19268 | 856394 ~ 861076 (+) |
| CI01000350_00825304_00827619 | NA | coding | upstream | 52669 | 825304 ~ 827675 (+) |
| CI01000350_00586494_00587461 | NA | coding | upstream | 292661 | 586494 ~ 587683 (+) |
| CI01000350_00457534_00503845 | NA | coding | upstream | 376379 | 457057 ~ 503965 (+) |
| CI01000350_00361432_00364007 | NA | coding | upstream | 516266 | 361432 ~ 364078 (+) |
| CI01000350_00887155_00896486 | NA | coding | downstream | 5942 | 887117 ~ 898009 (+) |
| CI01000350_01039300_01048692 | NA | coding | downstream | 156978 | 1038153 ~ 1048845 (+) |
| CI01000350_01068561_01071605 | NA | coding | downstream | 187236 | 1068411 ~ 1071779 (+) |
| CI01000350_01100195_01101995 | NA | coding | downstream | 219020 | 1100195 ~ 1102438 (+) |
| CI01000350_01110658_01123802 | NA | coding | downstream | 229483 | 1110658 ~ 1124225 (+) |
| G506943 | NA | non-coding | upstream | 10474 | 865174 ~ 869870 (+) |
| G506920 | NA | non-coding | upstream | 106459 | 773356 ~ 773885 (+) |
| G506906 | NA | non-coding | upstream | 122130 | 749818 ~ 758214 (+) |
| G506867 | NA | non-coding | upstream | 173070 | 705919 ~ 707274 (+) |
| G506855 | NA | non-coding | upstream | 185462 | 694051 ~ 694882 (+) |
| G506996 | NA | non-coding | downstream | 75503 | 956678 ~ 956910 (+) |
| G506813 | NA | non-coding | downstream | 123355 | 1004530 ~ 1004858 (+) |
| G506800 | NA | non-coding | downstream | 134797 | 1015972 ~ 1017022 (+) |
| G507024 | NA | non-coding | downstream | 181758 | 1062933 ~ 1063328 (+) |
| G507059 | NA | non-coding | downstream | 305976 | 1187151 ~ 1217232 (+) |
| G506911 | NA | other | upstream | 114233 | 765310 ~ 766111 (+) |
| G506786 | NA | other | upstream | 379588 | 499096 ~ 500756 (+) |
| G506858 | NA | other | downstream | 96916 | 978091 ~ 978891 (+) |
| CI01000350_01454880_01462490 | NA | other | downstream | 573388 | 1454563 ~ 1462490 (+) |
| G507699 | NA | other | downstream | 634534 | 1515709 ~ 1519828 (+) |
| CI01000350_02387606_02388868 | NA | other | downstream | 1506448 | 2387560 ~ 2388902 (+) |
