G507024



Basic Information


Item Value
gene id G507024
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1062933 ~ 1063328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU581372
ATACACACACACAATATATATATTCTGTAGTACAGTGGCAAGAAAACATATTATTTTGCATTAATTTGTCATAAAATTGTTATCTGATCTTCATCAAAGTCACACCACACGTATAGACGAAACACAATGTGACACACTACAACACAAACAATAATTTTCTTTAATGCCTTTATTGAACAGAACTTGTGACTTTTTTCTTTTTTTTTACCATGATGACCCACAAGTTTTTTTTTACTGTTGTGGTTGTTGTTCATGAGTCCTTGTTTGTCTTGAGCAGTTAAACTGCCCAATCTAAACTTTTCACTTAGGCCTACTTTTTTCAAAAGATTAATGGGATTTTAAATAAAGACATAATTTTATTTTTGTATGTTATGTTAACCACATTGTGTTTTGTCT

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU581372 True 396 lncRNA 0.30 1 1062933 1063328

Neighbor


gene id symbol gene type direction distance location
CI01000350_01039300_01048692 NA coding upstream 14088 1038153 ~ 1048845 (+)
CI01000350_00887155_00896486 NA coding upstream 164924 887117 ~ 898009 (+)
CI01000350_00856394_00860868 NA coding upstream 201857 856394 ~ 861076 (+)
CI01000350_00825304_00827619 NA coding upstream 235258 825304 ~ 827675 (+)
CI01000350_00586494_00587461 NA coding upstream 475250 586494 ~ 587683 (+)
CI01000350_01068561_01071605 NA coding downstream 5083 1068411 ~ 1071779 (+)
CI01000350_01100195_01101995 NA coding downstream 36867 1100195 ~ 1102438 (+)
CI01000350_01110658_01123802 NA coding downstream 47330 1110658 ~ 1124225 (+)
CI01000350_01136425_01169812 NA coding downstream 73097 1136425 ~ 1169812 (+)
CI01000350_01268618_01269611 NA coding downstream 205197 1268525 ~ 1269786 (+)
G506800 NA non-coding upstream 45911 1015972 ~ 1017022 (+)
G506813 NA non-coding upstream 58075 1004530 ~ 1004858 (+)
G506996 NA non-coding upstream 106023 956678 ~ 956910 (+)
G506964 NA non-coding upstream 181758 880344 ~ 881175 (+)
G506943 NA non-coding upstream 193063 865174 ~ 869870 (+)
G507059 NA non-coding downstream 123823 1187151 ~ 1217232 (+)
G507078 NA non-coding downstream 126776 1190104 ~ 1253441 (+)
G507123 NA non-coding downstream 242970 1306298 ~ 1313026 (+)
G507125 NA non-coding downstream 244006 1307334 ~ 1307891 (+)
CI01000350_01343443_01355860 NA non-coding downstream 290092 1343102 ~ 1356215 (+)
G506858 NA other upstream 84042 978091 ~ 978891 (+)
G506911 NA other upstream 296822 765310 ~ 766111 (+)
G506786 NA other upstream 562177 499096 ~ 500756 (+)
CI01000350_01454880_01462490 NA other downstream 391235 1454563 ~ 1462490 (+)
G507699 NA other downstream 452381 1515709 ~ 1519828 (+)
CI01000350_02387606_02388868 NA other downstream 1324295 2387560 ~ 2388902 (+)

Expression



Co-expression Network