G507700


Basic Information

Item Value
gene id G507700
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1495410 ~ 1558319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU582222
GCCGGCTGCATAGATTTCTTGAATGTTGGTCACCTGAATGTAAACATGCTTTGACCACATTAAAGCCCTGTTATGCAGTGCTTTAGTGTTGTCCACCCCAAATTTTCCCATACCATTCAAGCTGGAAGTAGATGCTAACAATGTAGGAGCAGTTGCTGTTCTTTTGCAGGAAGGGGCAGATGGGATTGATCACTGTTTTTTTTTTTTTTTTTTTTTTTCAGTAGTAACTCATTGACTTGTTTATTTTCTCTTTTCTGACACTGCCAGCCTGAGCTTCAGCTGACAGACCTCAGAACATTCAGTGTAATTTACAGTTACCGAAAGACATGAAAAATGACCTTTGGGCAGTTCATGCACAGTAGGCATCTTAGTACAAAATTACAAGACAAAATAAATAAACTGCAATGTAAAATATTTACAAAGACAATCAAGACAATCCATTGTTGGCATCTCATGCATCTTCCAAAAATATACAAACACTTTTTAAGGGGTGCCATTGCAAACAAAAAGTCCATAGATATCCAGGCTTTAACAGTCAGTCTTTACCCTTTAGTTACCAGAAACACATGGATATGTAAAGGCATCTTCATGTCAAACGCCTGTGATATTTAACTCTCCGTTCTACAGTGGGCTCTCAGGCCGCGCAGAGGTGGACTTCCTCTGAAACTTTTAACAACTAGAGATGCCTGATGGTGCTAAATTGTCCACATCAGATGCAGAGACAGTCTCATGAATAGCTCTCGTTCTCATTCCACGTGGTCATCCATTGCTTCTTCTCAAGGGGATCTAACATGTCCTTTCCTTCTTTCAAGAGACGTGTCTCCTTACGAATCCTCACTGCATGATATTTTGGAACGCTGTCCTCGTATTTGGAGCGTTTGAAAAATCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU582222 True 891 lncRNA 0.40 2 1495410 1558319

Neighbor

gene id symbol gene type direction distance location
CI01000350_01454880_01462490 NA coding upstream 32920 1454563 ~ 1462490 (+)
CI01000350_01374131_01407038 NA coding upstream 88372 1373797 ~ 1407038 (+)
CI01000350_01357162_01358608 NA coding upstream 136764 1356360 ~ 1358646 (+)
CI01000350_01343443_01355860 NA coding upstream 139525 1343102 ~ 1356215 (+)
CI01000350_01315313_01317803 NA coding upstream 177187 1315269 ~ 1318223 (+)
CI01000350_01583582_01585575 NA coding downstream 25164 1583483 ~ 1585964 (+)
CI01000350_01625265_01628425 DLX2A, DLX2 coding downstream 66824 1625143 ~ 1628624 (+)
CI01000350_01748423_01750654 NA coding downstream 190104 1748423 ~ 1751056 (+)
CI01000350_01860321_01869386 PDK1 coding downstream 301580 1859899 ~ 1870119 (+)
CI01000350_02051537_02098878 ZAK coding downstream 493218 2051537 ~ 2099018 (+)
G507673 NA non-coding upstream 66385 1428685 ~ 1429025 (+)
G507672 NA non-coding upstream 67150 1428042 ~ 1428260 (+)
G507656 NA non-coding upstream 94880 1400285 ~ 1400530 (+)
G507698 NA non-coding downstream 6347 1564666 ~ 1565610 (+)
G507697 NA non-coding downstream 16587 1574906 ~ 1595941 (+)
G507843 NA non-coding downstream 90410 1648729 ~ 1648957 (+)
G507847 NA non-coding downstream 104372 1662691 ~ 1662996 (+)
G507833 NA non-coding downstream 133212 1691531 ~ 1692427 (+)
G506858 NA other upstream 516519 978091 ~ 978891 (+)
G506911 NA other upstream 729299 765310 ~ 766111 (+)
G506786 NA other upstream 994654 499096 ~ 500756 (+)
CI01000350_02387606_02388868 NA other downstream 829304 2387560 ~ 2388902 (+)

Expression


Co-expression Network