XLOC_013855 (nuggc.1)


Basic Information

Item Value
gene id XLOC_013855
gene name nuggc.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7838644 ~ 7861280 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027694
GAACAAACTGAAAGAAACAATTCATAATCACGTTTTGGCGAGCCATGGCACTatcaagaaaaaggaaaatcaacagtgagtgcaggaaatttcagtcaggatggggcaaagaatatttcttcacagagTATGTCATAGTAGAGCACTGTGTCTGTTTGCTTGACTGCGGTACATCAAGAGATTCTGCATTCAATATACCACATTCTACTAACAATCCTGGGGGTCATCTAGAACAAACAAAAGACGCAGCAAGGCATAATCTCTGGCCACAGGGAACGTGCTAAGCTGAGGATCTTGTGAAAGCTGATCTGTCATGGATTCATACACCATTAACTTTATCACCTGGAATGCTAACGGACTTAAGCAAAACAAGTATCAGAAATTTCAAGAACTTCAATGCGCTGATGTTGTTTTCCTACAAGAGACACACATTGGAGCAGGGGATGAACATGTTATAGAAGGTTTAAAAAAGCGGTGGAATGTTTTCTATACAAAGTACAACTCTTCCAGCAGTGGAACTGCCATTCTCGTCAGAAAGAGTCTAGATTTCAAATGTTTAAGTGTCGAGAAAGGTAATTGTGGTGAATATGTATTGTTGAAATGTGAACTGGAAGGTTGCCTGTACACTCTAGTGAGTGTTTATAACCATCAGACAGACACAAAAACGCTTGATAATCTTTCAAGATACCTGCAGTCAATGACCACAGGGCTGCTGGTGATTGGTGGAGATTTCAACACATTCCTCAATCCGTTTATCGACAAAAAATGGAGTACAGGCAAGATGACAAAGAACAGAATGCACAATAAACTGCTCTTATGTGTGGAGAATTTCATGAAATCTCTTCAGCTGGCTGATGTGTGGAGAAGAATGAACCCTGTAAAGCAGGATTTTACATTCTACATAAGAGATCGTCCAGTGTCCAGACTCGATtacttcttcattccagatgaatGTATGTGGCGTGTAGGAAGTTGTGAAATCATGAATTCAAGGTTCGGAGAGCTCAAAGATCGTCAACCTGTGTCTTTAGAGATCAACTATGTCTCCACAGTGCCTCTTCTGATAGATCAAACACAGTCACTCTTCAAACtatttcactgcaaaaaaatacttttgactGATGAAACCAGTTCATCACAGTCTGAAGAAAGCTCACCTGCAGTCAGTGAAGTTGACATTGTGTCAGCGGTTCAGTCTCTTCAAGTGTCAGACACAGTAAGACCAGACGACATCCCAGTGTCCTTCTATAAAGACAACATCCGGGATGTAATTCCATACATAAAGATGCTCTATGACGGAATCCACAGGGGTGAAGTCAACTGCTCTGAATTGTATTTTCAAGATCCACAGGATGATATCCCTCACTTTTTTAATGCCGACTACCTCATCATTGCAACTATTCTGGCAAGACGTCTTGATGATTTCTTGAATCCTCAGTCAAAGGGTATGATTAAGGATTCAGCAATTGTTATGATCACTCCTAAAACAGTCTGCACTGAAGCAATGCTCTGCTGTCTAAAGGATGAAATTGAGGACTCACATTCAGTTCTTTATCAAGACTTTCCGCTTGTGGAAAAAATCTTCAGAGATTCAAAATTCAAAAAGTGTCAGGGCTGCCCACTGAAGCCAGTACTCACAGCTTTAAAACTGAAAAGCTGCGCCTTAAAGTTGTGTAAGAATTTAGAAAATTATGCAGTGCATGTTTTCAAGACAAATGTGATCATTTGCGTCCCATCTGAAGACCTAGATGAGATACTTGCTATGGAAAGCAGCAACAATGAAGAATATGATATTATGACATTATACAGAGGACAAAGTGTTGAGGGTAATGAGTCCGCAAGTGAAGATTATGATGGACTGTTGGAGGACACAGAAGACAATTCACAGTGTGAAGACAGCGACAATGGGTCAAATGAACATGAGGGAAAATCTAAATCGATTGAAAGaacaacCATGTATGCAGTTGTAACTTTAGAAGAATCAGAAGAGGTGATGGTGACAGCATCAAACTGGTTGACCGCAGACAAAAAACAATGTTACTGGCCTCCATACAAATCATCAGAGAAATTCATGGAAGCTGTTCAGTACAGATTTGCACCTCAAACAGGAGAGAAATCTTGGGAGAAATTAGCTGTCCTGTTTCATGGAGAATATGGCACTTATGAGGAGGCcaagaaaaaactaaaacaaatgaagCAGCCGGAACAAGCAGCCATAGCAATGAATCAAGTAACAGGAACCTGTCCACAGTCTCCTGGGCCATCTTGGTCAGGAATTTCACAGAATGCCAGTGGCACTAAAAGAAAGCGTGAATCGAGGGATTTAAAGATCAGTGCTAAATCATATTCAGatatGGAAATACTGAATATGACAAAAAAGATCATGAATGAAGTTAATGTCAGATTTCAAAACATTAAAAGCACAGACCAAACAACAAATGagataaaaaacacaattttAGATTCCATTGCAAAAATGAATGAGATGGACAAAGACAAAAGAAGAAAGGAAACCATTGGTGTTTTTGGCAAAACAGGAGAAGGAAAAAGCTCTTTATTAAATGCAGTGTTGGGATTAGAAGGTCTGCTGCCATGTGGTAGTCTTGGTGCCTGTACAGCAGTGATTACTCAAGTGGAAGCAAATCTTGAGGACTCTGAATACAAAGCTGAGATTGAGCTCATCTCTAAAGagGAATGGGAGAATGAGATTGCTTCCACAGATGAAAGGACTGATACAGATAATGAAAGGATCATTGCAGTGTATGGGGCTGATGCAGATAAGAAATCACTGGAAGAACTTAAGAAAAATGCCAAATATGCTGAAATTGATCACTTTTTGTCTACCGAGAAAAAAACAATTTCGCACACTGAAgtCCTTGACTTTGTCCGTGATGTTAAATGTCACATTCAGCAAAGTGAGTATAATCCTGGTGGCTGGTACTGGCCTCTTGTGAAGAGTGTGACCATCAAGATTCCAGATCGTCAAGAGCTTCTGGAACACATTGTGCTGTTTGATGTTCCTGGCACTGGAGACTGCAACAAGATACGAGATGATCTGTGGAAATCAAGAGTGAAGGAGTGCTCTTCTGTGTGGATTGTAAATGACATCAAGCGTGCAATCAGTAGCAAAGAGCCCTGGAGCATAATCGAGCACTGCATCCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCTAGGaTCTGCACAGCCATCTGGAGATCACTTTTCTTCAGACAAGAGTTCGAAAACAGCGTGCATTCATCATAGGAACAACTCTGCAAAGGATACTCTGAAAAGGAAGCTTGAAAACATGAAATCAAAAGACGTCAGAAGATTCACCGCTGATGTTTTTGCTGTCAGCTCTAAGGCATACTTTAATGAAGATCTCCAGATGGATAAAAATGAAACAGAAATCCCAAAGTTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGATCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCCTTATCCAACAAACCAAACTAAATACAACAGATGAAGAAATGGCAAAGATTAAAGCTGCAGTTCGTAATGATTACAAAGAGAGCCTTAAAAAAGCACTGAGGGAACTGAACGGTCGGTTTGATCCACTATATGAGACTATAGAGCAATGTTTCTCAAAGGGAGTGGAGAAATCAGTGGACCAGTGTCTCAGTACCACAAAGCCTGTGATTTCATCTGTGCCATATGATAAAACCCTCCAAGCATTGTGCAAGAAGAAAGGATTTTGCTGGCCACAATACTGGGATGCACCTGTAGATCTAAACAAGTGCTTGGCCAAACACATCTACGACAACATCGATGAGGAGTTCAGCTTGATATTTCCTGTTGATAGTAATAACATAACAGGGAGGTCAGTGCAAGAAAAGATTGATAAGTTCAGTGTTGTTCAGAATGGCACTGTTTACTCTCCATCTTCCATTCTATACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATCCCTCAAACAAGATGTTGTTAATAGAAAGAAGAATGTCTACTCAGTAATCCAAAAAACAATTCGGGATCAAATGACTGCAGGCTATAAAAAAGCTGCCGAGAAGAGAGGACAAGGAGCCATGGGAAAGAGAAAGagcacaataataaaaacaattgaatCATTAAAAGACAGCATGTTCGAAGAAGCAAAAATGCAATTTCTGAATGAGTTCAAGTCCTTGATGTGCTATATATGCGAGAGCCTTAAATCTAAGCTGAGCAGATCAATGGAGCGCTCATTTTCACAAAGCAGCAAAGCTTCCTTGATGGATGTCTCAAGAGAGATCGAAACCCTGGAGACACTGTCTGAATACATTGTCACTTAAATCTGACTGAAGTCATCATTTAAACACAAGGACAAAAGAAACAACATGTCAGCAT
>TCONS_00027695
GGTTAGGAGTTACCAGCATTGCTATACTTGCGGGGACAACTTTaggaatacaagGCACTAAAAGAAAGCGTGAATCGAGGGATTTAAAGATCAGTGCTAAATCATATTCAGatatGGAAATACTGAATATGACAAAAAAGATCATGAATGAAGTTAATGTCAGATTTCAAAACATTAAAAGCACAGACCAAACAACAAATGagataaaaaacacaattttAGATTCCATTGCAAAAATGAATGAGATGGACAAAGACAAAAGAAGAAAGGAAACCATTGGTGTTTTTGGCAAAACAGGAGAAGGAAAAAGCTCTTTATTAAATGCAGTGTTGGGATTAGAAGGTCTGCTGCCATGTGGTAGTCTTGGTGCCTGTACAGCAGTGATTACTCAAGTGGAAGCAAATCTTGAGGACTCTGAATACAAAGCTGAGATTGAGCTCATCTCTAAAGagGAATGGGAGAATGAGATTGCTTCCACAGATGAAAGGACTGATACAGATAATGAAAGGATCATTGCAGTGTATGGGGCTGATGCAGATAAGAAATCACTGGAAGAACTTAAGAAAAATGCCAAATATGCTGAAATTGATCACTTTTTGTCTACCGAGAAAAAAACAATTTCGCACACTGAAgtCCTTGACTTTGTCCGTGATGTTAAATGTCACATTCAGCAAAGTGAGTATAATCCTGGTGGCTGGTACTGGCCTCTTGTGAAGAGTGTGACCATCAAGATTCCAGATCGTCAAGAGCTTCTGGAACACATTGTGCTGTTTGATGTTCCTGGCACTGGAGACTGCAACAAGATACGAGATGATCTGTGGAAATCAAGAGTGAAGGAGTGCTCTTCTGTGTGGATTGTAAATGACATCAAGCGTGCAATCAGTAGCAAAGAGCCCTGGAGCATAATCGAGCACTGCATCCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCTAGG

Function

symbol description
nuggc.1 Predicted to enable GTPase activity.

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003924 GTPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-148 Predicted to enable GTPase activity.

Ensembl:

ensembl_id ENSDARG00000071001

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027694 False 4487 mRNA 0.40 23 7838644 7861280
TCONS_00027695 True 1006 mRNA 0.40 7 7847920 7851990

Neighbor

gene id symbol gene type direction distance location
XLOC_013854 cks1b coding upstream 412 7835025 ~ 7838232 (+)
XLOC_013853 aqp10b coding upstream 21758 7810028 ~ 7816886 (+)
XLOC_013852 hax1 coding upstream 33512 7799036 ~ 7805132 (+)
XLOC_013851 ubap2l coding upstream 40692 7757682 ~ 7797952 (+)
XLOC_013850 tuft1b coding upstream 88449 7717449 ~ 7750195 (+)
XLOC_013856 si:dkeyp-85e10.3 coding downstream 3487 7864767 ~ 7873836 (+)
XLOC_013857 nuggc.2 coding downstream 16842 7878122 ~ 7886461 (+)
XLOC_013858 nuggc.3 coding downstream 33806 7895086 ~ 7923910 (+)
XLOC_013859 si:dkey-266f7.4 coding downstream 68424 7929704 ~ 7931923 (+)
XLOC_013860 si:dkey-266f7.5 coding downstream 76841 7938121 ~ 7950953 (+)
XLOC_013841 BX927401.3 non-coding upstream 354313 7484217 ~ 7484331 (+)
XLOC_013837 FP085394.1 non-coding upstream 532081 7306467 ~ 7306563 (+)
XLOC_013834 NA non-coding upstream 563290 7274583 ~ 7275354 (+)
XLOC_013832 FP101875.1 non-coding upstream 570618 7242117 ~ 7268026 (+)
XLOC_013862 NA non-coding downstream 100241 7961521 ~ 7965420 (+)
XLOC_013863 CR936442.1 non-coding downstream 104836 7966116 ~ 7968667 (+)
XLOC_013865 BX545847.1 non-coding downstream 437714 8298994 ~ 8299110 (+)
XLOC_013866 NA non-coding downstream 561632 8422912 ~ 8424378 (+)
XLOC_013870 NA non-coding downstream 812402 8673682 ~ 8677972 (+)

Expression


Co-expression Network