XLOC_013857 (nuggc.2)


Basic Information

Item Value
gene id XLOC_013857
gene name nuggc.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7878122 ~ 7886461 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027698
AATCTGTGACATGGTGCTCCATgtttggtgtgaatgcagcattccACTGTGAACAGCCCAGCTGGCATCACCTCGTGTAGAgcatcatattttaaatatttgtattgctTCCAAATTAGAAACCACCTCATGTGCAttttataactctgaatctgATGTAACTGTGTCTTATTTTAAAGGCTGTAACTGTTCTGTTGAGGTCACATTTGAGCCACACTTACATACATTGAGGCAGGGGTGCAGTTCAACATGAGTGTGTAATGTAGAGCAATACCACTggtgttttattcagtttttatttttctaattccaCAGAAAGTGAGAGAGTGCTCTTCTGTGTGGATTGTAAATGGCATCAGTCGAGCAATTAGTAGCATAGAGCCATGGAGCATAATGGAGCACTGCATGCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCAAAGaTCTGCACTGCCCTCTGGAGACCAATTTACTTCAGGGAAGaatctgAAAACAGCATGCATACATCATAGGAACAAGACTGCAAAGGATTCCGTGAAAAACAAGTTTGAAACCATGAAATCAAAAGACTTCAGAAGATTCACCGCTGATGTTTTTACTGTCAGCTCGAAGGCATACTTTGATGCAGATCTTCAGATGGATCAAAATGAAACTgAAATCCCCAAACTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGATCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCTTCATCCAAAGTATCAAACTGGATACAAATGAAGGAATGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCGGTTTGATTCACATTACAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAGCAAGGATGCAGCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGACAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCGGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACCCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGAGATGTTGTccatagaaagaaaaaaatctactCATCGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCGGAGAAGAAAGGAGTAGGAGCCATGGGAAGGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGacacaaaaatacaatttctgaAAGAGTTCAAGTCTGTGACGAGCGATATATGCGAGAGACTTAAATCTGAGTTGAGCAGATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGAAAGAGATTGAAACCCTGGAGACATTGTCTGAACACATCGCAGAAATCTGACTAATGTCAACATTTTAAAGCAACGGCAAGAGAGAACGCATTTCAGCATCTCCAGTTACTCGAGAATTAAACCTTTTGGTTAATATCTACTGTTGATTTAAAATGTGTCTGTCTAGTCACATAAGACttgatatatataaatgaaagaatacttttttttttgatgtgtagttttgtttttaatgagaTAGAGCTTAAACTTGCAAAAGTAGCATACTGAAATGAATTGTACTGTTTGTCACTTCATATGTACTGTAACATGCTTGTAGATTGTGTGACTGATTGTgataatgtgcaaatgttaaatctAGCTAATACACAATGAGAAGCAGAGAGGGTGATCATTGATTTTGTAGTAAACCATTT
>TCONS_00027699
TGTTGTATAGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCGGTTTGATTCACATTACAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAGCAAGGATGCAGCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGACAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCGGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACCCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGAAGCTGCGGAGAAGAAAGGAGTAGGAGCCATGGGAAGGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGacacaaaaatacaatttctgaAAGAGTTCAAGTCTGTGACGAGCGATATATGCGAGAGACTTAAATCTGAGTTGAGCAGATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGAAAGAGATTGAAACCCTGGAGACATTGTCTGAACACATCGCAGAAATCTGACTAATGTCAACATTTTAAAGCAACGGCAAGAGAGAACGCATTTCAGCATCTCCAGTTACTCGAGAATTAA
>TCONS_00027700
GACAGAGTGCAAGCATACATGTCCaacataattaataaatcatCTATAGAAGGACTGTCATAACTGTCCTGAGCAATGAGGACCAGGACGAATCtaaagtctattcaagtccacCTACCCAAgtctttaaataaatgtagcattttaaacaACATGGCCCTACATGCTATAATAGAATactgagaaaaaaacaaacaaaaatactgatattaaacatttttatagcatAAATTATTGTACTGTGAGTTCAGTATTGAGATACGGCTCGAATGAAGAGTTGACTGTAACGTCACACCCCCAATGAAAGATAATGTTTTTTACTTTCAGGACTTTCTAAATGTAAtgctttgttttgtattgtaaatCAGGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAGCAAGGATGCAGCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGACAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCGGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACCCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGAGATGTTGTccatagaaagaaaaaaatctactCATCGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCGGAGAAGAAAGGAGTAGGAGCCATGGGAAGGAGAGAGA

Function

symbol description
nuggc.2 Orthologous to human NUGGC (nuclear GTPase, germinal center associated).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-185 Orthologous to human NUGGC (nuclear GTPase, germinal center associated).

Ensembl:

ensembl_id ENSDARG00000091951

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027698 False 2049 mRNA 0.39 12 7878122 7886461
TCONS_00027699 False 811 lncRNA 0.41 6 7881177 7886165
TCONS_00027700 True 801 lncRNA 0.37 4 7882943 7885479

Neighbor

gene id symbol gene type direction distance location
XLOC_013856 si:dkeyp-85e10.3 coding upstream 4286 7864767 ~ 7873836 (+)
XLOC_013855 nuggc.1 coding upstream 16842 7838644 ~ 7861280 (+)
XLOC_013854 cks1b coding upstream 39890 7835025 ~ 7838232 (+)
XLOC_013853 aqp10b coding upstream 61236 7810028 ~ 7816886 (+)
XLOC_013852 hax1 coding upstream 72990 7799036 ~ 7805132 (+)
XLOC_013858 nuggc.3 coding downstream 8625 7895086 ~ 7923910 (+)
XLOC_013859 si:dkey-266f7.4 coding downstream 43243 7929704 ~ 7931923 (+)
XLOC_013860 si:dkey-266f7.5 coding downstream 51660 7938121 ~ 7950953 (+)
XLOC_013861 si:dkey-266f7.10 coding downstream 68218 7954679 ~ 7957870 (+)
XLOC_013862 NA coding downstream 75060 7961521 ~ 7965420 (+)
XLOC_013841 BX927401.3 non-coding upstream 393791 7484217 ~ 7484331 (+)
XLOC_013837 FP085394.1 non-coding upstream 571559 7306467 ~ 7306563 (+)
XLOC_013834 NA non-coding upstream 602768 7274583 ~ 7275354 (+)
XLOC_013832 FP101875.1 non-coding upstream 610096 7242117 ~ 7268026 (+)
XLOC_013863 CR936442.1 non-coding downstream 79655 7966116 ~ 7968667 (+)
XLOC_013865 BX545847.1 non-coding downstream 412533 8298994 ~ 8299110 (+)
XLOC_013866 NA non-coding downstream 536451 8422912 ~ 8424378 (+)
XLOC_013870 NA non-coding downstream 787221 8673682 ~ 8677972 (+)

Expression


Co-expression Network