XLOC_013858 (nuggc.3)


Basic Information

Item Value
gene id XLOC_013858
gene name nuggc.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7895086 ~ 7923910 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027701
CTTTTTTGAAACTTAGAAGATATCCGTTGAGATCCAGTACACCTTTCCACAACAAAAGCAGAAGAGAAACTTTATCTTTCCCTTTAGTATGTTTCTCTCTTTAAAAGACCACACCCAATGATGACTCAGAGCTAACACACAGAATAGTAGCAATCCTGTACTTCATTGCTCTTGGCAGTCGTATCGGCAGGAGTGTTCTGTCCTTCAGACGTTATCCAGAGAAATAAAAGGACCACCATGTATGCAGTTGTAACCTTAGAAGAATCAGAAGAGGTGATGGTGACAGCATCAAACTGGTTGAGCGAAGACAAAAAACAATGTTACTGGCCTCCATACAAATCATCAGAGAAATTCATAGAAGCTGTTCAGAAAGGATTAGCACCTCAAACAGGAGAGAAATCTTGGGAGAAATTAGCTGTCCTGTTTCATGAAGAATATGGCACTTATGAGGAGGCCaaggaaaaacaaaaagaattgaATGAGCAGACAGAACAAGCAGCCACAGCAGTGAATCAAGTGACAGAAACCTGTCCACTGTTTCCTGGGCCATCATTAGGATTTTCACAGAATGCCAGTGGGTCCAAAGTATTTAGCATTGCTGTACTTGCCGGGACAACTTTAGAAATACAAgGCACTAAAAGAAAGCGTGAATCGAGGGATTTAAATATCAGTGCTAAATCAAATTCAGAGATGGCCATATtgaatatggcaaaaaaaaaaatgaatgaagttaaTGTTAGACTTCAGAACATCAGCAGCACAGACCGAACGACAAATGAGTTGAAAAACACCATTTTAGATGCCATTGCAAAAATTAATGAGATGGAGAAAGACAAAAGAAGAAAGGAAACTATTGGTGTTTTTGGAAAAACAGGAGAAGGAAAAAGCTCTTTATTAAATGCAGTGTTGGGATTAGAGGGTCTACTGCCATCTGGTAGTCTTGGTGCCTGTACAGCAGTTATTACTCAAGTGGAAGCAAATCTGGAGGACTCTGAATACAAAGCTGAGATTGAGCTTATCTCTAAAGagGAATGGGAGAGGGAGATTGCTTCCAAAGATGAAAGAACTGATACAGATAATGAAAGGATCATTGCAGTGTATGGGGCTGATGCAGATAAGAAATCACTGGAAGAACTTAAAAAAGATGCCAAATATGCTGAAATTGATCACTTTTTGTCCGCtgggaaaaaaattatttcacatACTGAAGTCTTTGACTTTCTCCATGATGTTAAACGTAACATTGAGCAAAGTGAGTATAATCCTGGTGGCTGGTACTGGCCTCTTGTGAAGAGTGTGACCATCAAGATTCCAGATCGTCAAGAGCTTCTGGAACACATTGTGCTGTTTGATGTTCCTGGCACTGGAGACTGCAACAAGATACGAAATGATCTGTGGAAATCAAAAGTGAGAGAGTGCTCTTCTGTGTGGATTGTAAATGGTATCAATCGAGCAATTAGTAGCATAGAGCCCTGGAGCATAATGGAGCACTGCATGCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCAAAGaTCTGCACGGCCCTCTGGAGACCAATTTACTTCAGGCAAGaatctGAAAACAGCATGCATACATCATAGGAACAAGACTGCAAAGGATTCCGTGAAAAACAAGTTTGAAACCATGAAATCAAAAGACTTCAGAAGATTCACCGCTGATGTTTTTACTGTCAGCTCTAAGGCATACTTTGATGCAGATCTTCAGATGGATCAAAATGAAACTGAGATCCCAAAACTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGACCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCTTCATCCAAAGTATCAAACTGGATACAAATGAAGGAATGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCAGTTTAATTCACATTATAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAACAAGGATGCACCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGAAAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCAGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACGCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGCGATGTTGTCCAAAGAAAGATAAACATCTACTCATTGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCAGAGAAGAGAGGACTTGGAGCCATGGGAAAGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGACGCAAAAATACAATTTCTGAAAGAGTTCAAGTCTGTGACGAACTATATAGGCAAGACCCTTAAAACTGAGCTGAGCAAATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGACAGAGATTGAAACCCTGGAGACGCTGTCTGAACACATCGCAGAAATCTGACTAATGTTAACAGTTTAAAGCGACGACGAGAGAACGCAATTCAGCATCTCCAGTTACTCATGAATTTAAACCTTTAAGTGAATATCCACTGTTGATTTAAAACTTGTCTGTCTATTCACATGTCTTGATATAGGTGTGAAAGAACACTTTTTTGAtgtgtagttttgtttttaattagatAGAGCTTAAACCTGCTAAAGTAGAGTACTGAAATTAATTGTACTGTATGTCACTTCATATGTACTGTAACATGCTTGTAGTCTGTGTGACTGATTGTgataatgtgcaaatgttaaatctAGCTAATACGCAATGAGAAGCAGAGAGGGTGATCATTGATTTTGTATTAAAACCATTTAAAGTTTTCTCAGATCGTTAATATTTTGTTTGACGTTTCATTACACACAAAATGattgaattattaaaacaatGCAGTTAAGTCTTAAATCGAAGCTAAAATATGAACACAGACAGCTTGATATGAATTCTAGTAGATGTTGAATAAtcattgaataattttttttttttggtttgcagCTATTCAGTACTTGTGTGAAATTTGTATAATGGCCTACTTTTTCATGTTCACTGAGTAAAAGAAATACGTGTGTGTCCTAAAAGATTGTATACACAATAAGAGTATGTGGAACGTTCTACCAGaacgtacattatctgtccctgaaataaaaacataaatacagtgaa
>TCONS_00027702
CTTGAGGTAAAAAAGTCCAGTGTATAAATCTGTGACATGGTGCTCCATGAGTGGTGTGAACAAAGCATTACACTGTAAACTGCTCAGCTGGGTTCTCCATCATATTTCAAACATTTGTATTGTTTCCAAATTAAAAACCACTTCATGTGCATTTTTTAACTCTGAATTTGATTTAACGCTGTTTTATTTTGGAGGCTGTTACTGTCCTGTTGAGGTTACATTTTAGACACACTCACATACATTGAGGCCGGGGTGCGTTCAACATAAGTGTGTAATGTAGAGCAATAACACTGGtgtttcattcagtttttatttttctaattccaCAGAAAGTGAGAGAGTGCTCTTCTGTGTGGATTGTAAATGGTATCAATCGAGCAATTAGTAGCATAGAGCCCTGGAGCATAATGGAGCACTGCATGCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCAAAGaTCTGCACGGCCCTCTGGAGACCAATTTACTTCAGGCAAGaatctGAAAACAGCATGCATACATCATAGGAACAAGACTGCAAAGGATTCCGTGAAAAACAAGTTTGAAACCATGAAATCAAAAGACTTCAGAAGATTCACCGCTGATGTTTTTACTGTCAGCTCTAAGGCATACTTTGATGCAGATCTTCAGATGGATCAAAATGAAACTGAGATCCCAAAACTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGACCAGAGATTATGTCAATCAAGCAA
>TCONS_00027703
CTTGAGGTAAAAAAGTCCAGTGTATAAATCTGTGACATGGTGCTCCATGAGTGGTGTGAACAAAGCATTACACTGTAAACTGCTCAGCTGGGTTCTCCATCATATTTCAAACATTTGTATTGTTTCCAAATTAAAAACCACTTCATGTGCATTTTTTAACTCTGAATTTGATTTAACGCTGTTTTATTTTGGAGGCTGTTACTGTCCTGTTGAGGTTACATTTTAGACACACTCACATACATTGAGGCCGGGGTGCGTTCAACATAAGTGTGTAATGTAGAGCAATAACACTGGtgtttcattcagtttttatttttctaattccaCAGAAAGTGAGAGAGTGCTCTTCTGTGTGGATTGTAAATGGTATCAATCGAGCAATTAGTAGCATAGAGCCCTGGAGCATAATGGAGCACTGCATGCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCAAAGaTCTGCACGGCCCTCTGGAGACCAATTTACTTCAGGCAAGaatctGAAAACAGCATGCATACATCATAGGAACAAGACTGCAAAGGATTCCGTGAAAAACAAGTTTGAAACCATGAAATCAAAAGACTTCAGAAGATTCACCGCTGATGTTTTTACTGTCAGCTCTAAGGCATACTTTGATGCAGATCTTCAGATGGATCAAAATGAAACTGAGATCCCAAAACTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGACCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCTTCATCCAAAGTATCAAACTGGATACAAATGAAGGAATGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCAGTTTAATTCACATTATAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAACAAGGATGCACCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGAAAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCAGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACGCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGCGATGTTGTCCAAAGAAAGATAAACATCTACTCATTGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCAGAGAAGAGAGGACTTGGAGCCATGGGAAAGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGACGCAAAAATACAATTTCTGAAAGAGTTCAAGTCTGTGACGAACTATATAGGCAAGACCCTTAAAACTGAGCTGAGCAAATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGACAGAGATTGAAACCCTGGAGACGCTGTCTGAACACATCGCAGAAATCTGACTAATGTTAACAGTTTAAAGCGACGACGAGAGAACGCAATTCAGCATCTCCAGTTACTCATGAATTTAAACCTTTAAGTGAATATCCACTGTTGATTTAAAACTTGTCTGTCTATTCACATGTCTTGATATAGGTGTGAAAGAACACTTTTTTGAtgtgtagttttgtttttaattagatAGAGCTTAAACCTGCTAAAGTAGAGTACTGAAATTAATTGTACTGTATGTCACTTCATATGTACTGTAACATGCTTGTAGTCTGTGTGACTGATTGTgataatgtgcaaatgttaaatctAGCTAATACGCAATGAGAAGCAGAGAGGGTGATCATTGATTTTGTATTAAAACCATTTAAAGTTT
>TCONS_00027704
tgttttataGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCAGTTTAATTCACATTATAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAACAAGGATGCACCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGAAAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCAGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACGCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGAAGCTGCAGAGAAGAGAGGACTTGGAGCCATGGGAAAGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGACGCAAAAATACAATTTCTGAAAGAGTTCAAGTCTGTGACGAACTATATAGGCAAGACCCTTAAAACTGAGCTGAGCAAATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGACAGAGATTGAAACCCTGGAGACGCTGTCTGAACACATCGCAGAAATCTGACTAATGTTAACAGTTTAAAGCGACGACGAGAGAACGCAATTCAGCATCTCCAGTTACTCATGAATT
>TCONS_00027705
ACAGAGTGCAAGCATATGTGTCCaacataattaataaatcatCTATAGAAGGACTGTCATAACTGTCCTGAGCATTGAGGACCAGGACCAATCTAAAGTCTATTCAAGTTCACCACCccaaatctataaataaattttacattttaaccaACAGAAGGCCTACATGCTATAATATAATACtgaggaaaaacaaaaaacaaaaatactgatattaaacatttaatagcATAAATTATTGTACTGTGAGTTCAGTATTGAGATACGGATCGAATGAAGAGTTGACTATATCGTCACACCAATAATGAAAGATAATGTTCTTTTCTTCCAGGCTTTTCTAAATGTAAtgctttgttttgtattgtaaatCAGGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAACAAGGATGCACCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGAAAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCAGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACGCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGCGATGTTGTCCAAAGAAAGATAAACATCTACTCATTGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCAGAGAAGAGAGGACTTGGAGCCATGGGAAAGAGAGAGA

Function

symbol description
nuggc.3 Orthologous to human NUGGC (nuclear GTPase, germinal center associated).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-67 Orthologous to human NUGGC (nuclear GTPase, germinal center associated).

Ensembl:

ensembl_id ENSDARG00000058672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027701 False 3477 mRNA 0.38 22 7895086 7923910
TCONS_00027702 False 804 lncRNA 0.39 5 7916790 7919014
TCONS_00027703 False 2062 mRNA 0.38 12 7916790 7923570
TCONS_00027704 False 807 lncRNA 0.40 6 7919150 7923271
TCONS_00027705 True 802 lncRNA 0.36 4 7920135 7922594

Neighbor

gene id symbol gene type direction distance location
XLOC_013857 nuggc.2 coding upstream 8625 7878122 ~ 7886461 (+)
XLOC_013856 si:dkeyp-85e10.3 coding upstream 21250 7864767 ~ 7873836 (+)
XLOC_013855 nuggc.1 coding upstream 33806 7838644 ~ 7861280 (+)
XLOC_013854 cks1b coding upstream 56854 7835025 ~ 7838232 (+)
XLOC_013853 aqp10b coding upstream 78200 7810028 ~ 7816886 (+)
XLOC_013859 si:dkey-266f7.4 coding downstream 5794 7929704 ~ 7931923 (+)
XLOC_013860 si:dkey-266f7.5 coding downstream 14211 7938121 ~ 7950953 (+)
XLOC_013861 si:dkey-266f7.10 coding downstream 30769 7954679 ~ 7957870 (+)
XLOC_013862 NA coding downstream 37611 7961521 ~ 7965420 (+)
XLOC_013863 CR936442.1 coding downstream 42206 7966116 ~ 7968667 (+)
XLOC_013841 BX927401.3 non-coding upstream 410755 7484217 ~ 7484331 (+)
XLOC_013837 FP085394.1 non-coding upstream 588523 7306467 ~ 7306563 (+)
XLOC_013834 NA non-coding upstream 619732 7274583 ~ 7275354 (+)
XLOC_013832 FP101875.1 non-coding upstream 627060 7242117 ~ 7268026 (+)
XLOC_013865 BX545847.1 non-coding downstream 375084 8298994 ~ 8299110 (+)
XLOC_013866 NA non-coding downstream 499002 8422912 ~ 8424378 (+)
XLOC_013870 NA non-coding downstream 749772 8673682 ~ 8677972 (+)

Expression


Co-expression Network