G508878


Basic Information

Item Value
gene id G508878
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000351
NCBI id null
chromosome length 2332503
location 644488 ~ 645103 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU583529
GGAAATAATTGGTTGGCATTAGCAACGTTTCGGCCGAGCCAGGCCTGAATACAGATATAGCAGAAGAAAGAGAAACAAACAGACAGAAAACACACTGAAGAACAGGCAAACTTCCCTGTTAAGCCTCATACTGAGATTGTGAGGCAAGAGACTGTAACAGAATGACAAGCTCCTCCACCCCTAGAATGCACACGTACAAGAGGACTTCCAGCCCTCGATCACCAACGAATACAGGAGAGCTTTTCACACCAGCACATGAAGAAAATGTGCGCTTCATCCATGACACATGGCTTTGTGTTTTGAGAGACATTAAATCCCCACAAAATAGTGAACGTAATGATCGTGGACCACAGGAGTATGTGGAGAAAAACCCAAATCCCAACCTACATTCTTTTATACCAGTGGACCTGAGTGACCTTAAGAAGAGGAACACACAAGACTCCAAGAAGTCTTAGACCATTCCCTCTCTTTTTGATCCAGCAGTTTTTTGTCCTCCATTTTACATTTGGGACCTTTTTACTCTCTCAGTCTTCTGTCAGCCAACAAAGAGCCACGAGCCGGAATATTTGGCCATCCCAGTCCAGAAAGCTTCTCTCTTCTCTGCCTCATGGACCTGTGGTCTGGACTTACAGGCTGACGTCTATTTATGAGTTACAGTTTCAAGAGCCGTTTGAGTGGCCATTCCCTGTTTTTCATGTTCATCCGGGCTCTCTGATCTTACAAATGGGAAAACATAAAAGACCTGTTTCAGGATTTTTTTCTTTCTCCCTAGTTTTGAGTTTAGATGATTCTTCATGTGCATTTTTTATGTTGAGATGACAAACGGGAAAGGCACAGAACAGTTAAACTGTTGGACTGACTCTACACAGACTTTCTCTAAATGGGATGATGCAGTCCTGGAATTTACTCCTTTTTCAAACCATCTTCATCAACCGCAGAGGAGCGACTGACTGACTGTTTAGTTAGTTTCATAGATTGATTGATTGATTGATTGAATAGAAGAATTAGAAAGTTTTGTCTGATAGGACAGGTAAGTTTGGCTCGGCAAATATTTTTAGTAGATGTACCTCCATTTTTAACTATGAATTGATACCTTCAAGAACTTTAATTAGACTTTTCCACATCTATCGTTCCCAGACTTTAAAATAAAATTAAAATAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU583529 True 169 TUCP 0.41 2 644488 645103

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025860 mcrip1 coding NC_007114.7 CM002887.2 59864872 ~ 59876861 (+)
bowfin (Amia calva) G28366 NA non-coding CM030123.1 CM030123.1 41826442 ~ 41826766 (-)