XLOC_013868 (s100a10a)


Basic Information

Item Value
gene id XLOC_013868
gene name s100a10a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8506178 ~ 8608414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027717
TTCAGATCCTCCCGATTACTGGGTGTTCATTAGCACCTGCTGGTCATTTCTCTAATTACCTGACCAATCATATATAACTAGCCACCTgacttttttcatgttttcactGACTTTTTCCAAGATGGTTAACCATTCTAAAGTGATTGAAAATCAATGACAACACAAGACACTTTCAGCCATGAAAGAGAAGCTGATTGTAACAAATCTGAGATTCTAACTCATTCAAGTTCTCGAGAAAGGCTGATAACCAAGGAAATACAGATTCACAAGACGACAGGACAATGTGGAGAAGAACTTGCCTTGACCAGATATGAGCCGGGCTCCACTGAGCATGCCCAGTAGTGTCGTCCCTGTGTTATGGCCACATCTCCCACCAGCAGATCCGCTGTCAGGTGGCAGGAGGTCAGTGCCCGATCAGCGGCCTGCAGCAGAGACAGACCGGGCACACTGCGGGCGCATCGCTGCTCCTTACTCACCACCAGTCTGTCCGCGTGCAGACCCCAGCGAGAGTCCagTGCTTGACCTGAGCATCGCGCAGCCATGCCATCCGAACTAGAGACCGCCATGGAGTCCCTCATCATGGTTTTCCACCGATATGCTGGAAAGGAGGGCAGGAGCGGCACCCTGACCCGACGGGAACTCCGAATACTAATGGAGAACGAGCTCTCTGGGTTCCTTAAGTCTCAGAAGGATCCGACATTCGTCGACAGAATTATGAAAGATCTGGATGCCAATGGAGACGGCGAGGTTGACTTTGAGGAGTTTGTGTCTTTGGTCTTGGGTTTGTCCATCGCCTGCGAGGCTTGCTACAGGGTGGATTTAAGGAAGTCACAAAGCTGGAACCTTtgagtttgtgtatatgtgtgtgcttgtttgtgtgtgtgtgtgtgtgtgtgtgttagtatcGAATGAACGCCATAAAAACGTCTTTTGCTGCGAGGTTAAAGTACAGTGGGTGTGTTTGACGGGTCTTGACATTCTTTGGCCTACAAACAGTATTTTTTCTTGAGCTTGTCCTAAAAACAGAGgatgtttttatttgaaataaagctTTAATATTTGAAAGTCTTCATGTGTAGggttttattattaaagacagaattattagccctgctgtcaACTATTTAttccatttcaaatatttttaacagagcaagaagaTTTCTCTAATAGTTTTATAATGTTGTTTTAAGCTGTACATGAATATTCATACACGCAgtgtattattcattattcaGTGTGTTATTCTCTCTCTTTTCCTCATTAAAACTATAGTTAATGATTAATACAAAACCCAGCCTGCCTTCTTAGTAATTAGTGGAGTTagaatgtaataaaaatgtttctgacacaataaacattgtaatacaaaataaaaatatatgttaaaatcGGCATGAAGTGAGAGTTGTGATGGTGTTTTCTAATcctattattggttttatttaagttaaattgctTCCTGAACAAGAAACAATGTATAGGACTGTATAATGTACAATTCTGTGTATTTTATGTGAGTGACAAAATTGCCCCAA
>TCONS_00027718
ctcaaatatttcacTCAGTCGCCCAAACGTGCTTGACCTGAGCATCGCGCAGCCATGCCATCCGAACTAGAGACCGCCATGGAGTCCCTCATCATGGTTTTCCACCGATATGCTGGAAAGGAGGGCAGGAGCGGCACCCTGACCCGACGGGAACTCCGAATACTAATGGAGAACGAGCTCTCTGGGTTCCTTAAGTCTCAGAAGGATCCGACATTCGTCGACAGAATTATGAAAGATCTGGATGCCAATGGAGACGGCGAGGTTGACTTTGAGGAGTTTGTGTCTTTGGTCTTGGGTTTGTCCATCGCCTGCGAGGCTTGCTACAGGGTGGATTTAAGGAAGTCACAAAGCTGGAACCTTtgagtttgtgtatatgtgtgtgcttgtttgtgtgtgtgtgtgtgtgtgtgtgttagtatcGAATGAACGCCATAAAAACGTCTTTTGCTGCGAGGTTAAAGTACAGTGGGTGTGTTTGACGGGTCTTGACATTCTTTGGCCTACAAACAGTATTTTTTCTTGAGCTTGTCCTAAAAACAGAGgatgtttttatttgaaataaagctTTAATATTTGAAAGTCTTCATGTGTAGggttttattattaaagacagaattattagccctgctgtcaACTATTTAttccatttcaaatatttttaacagagcaagaagaTTTCTCTAATAGTTTTATAATGTTGTTTTAAGCTGTACATGAATATTCATACACGCAgtgtattattcattattcaGTGTGTTATTCTCTCTCTTTTCCTCATTAAAACTATAGTTAATGATTAATACAAAACCCAGCCTGCCTTCTTAGTAATTAGTGGAGTTagaatgtaataaaaatgtttctgacacaataaacattgtaatacaaaataaaaatatatgttaaaatcGGCA
>TCONS_00027719
GCTTGACCTGAGCATCGCGCAGCCATGCCATCCGAACTAGAGACCGCCATGGAGTCCCTCATCATGGTTTTCCACCGATATGCTGGAAAGGAGGGCAGGAGCGGCACCCTGACCCGACGGGAACTCCGAATACTAATGGAGAACGAGCTCTCTGGGTTCCTTAAGTCTCAGAAGGATCCGACATTCGTCGACAGAATTATGAAAGATCTGGATGCCAATGGAGACGGCGAGGTTGACTTTGAGGAGTTTGTGTCTTTGGTCTTGGGTTTGTCCATCGCCTGCGAGGCTTGCTACAGGGTGGATTTAAGGAAGTCACAAAGCTGGAACCTTtgagt

Function

symbol description
s100a10a Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; intestinal bulb primordium; and sensory system. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-35 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; intestinal bulb primordium; and sensory system. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

Ensembl:

ensembl_id ENSDARG00000037425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027717 False 1538 mRNA 0.42 4 8506178 8608414
TCONS_00027718 False 911 mRNA 0.39 3 8606883 8608273
TCONS_00027719 True 335 mRNA 0.53 2 8606993 8607727

Neighbor

gene id symbol gene type direction distance location
XLOC_013867 efna1a coding upstream 3857 8481802 ~ 8502321 (+)
XLOC_013866 NA coding upstream 81800 8422912 ~ 8424378 (+)
XLOC_013864 efna3a coding upstream 166318 8144556 ~ 8339860 (+)
XLOC_013865 BX545847.1 coding upstream 207068 8298994 ~ 8299110 (+)
XLOC_013863 CR936442.1 coding upstream 537511 7966116 ~ 7968667 (+)
XLOC_013869 snx27a coding downstream 4425 8612839 ~ 8647894 (+)
XLOC_013870 NA coding downstream 65268 8673682 ~ 8677972 (+)
XLOC_013871 NA coding downstream 152458 8760872 ~ 8761674 (+)
XLOC_013872 NA coding downstream 327921 8936335 ~ 8936623 (+)
XLOC_013873 crabp2b coding downstream 364628 8973042 ~ 8980038 (+)
XLOC_013862 NA non-coding upstream 540758 7961521 ~ 7965420 (+)
XLOC_013841 BX927401.3 non-coding upstream 1021847 7484217 ~ 7484331 (+)
XLOC_013887 BX005154.1 non-coding downstream 773036 9381450 ~ 9427416 (+)
XLOC_013888 dre-let-7d-2 non-coding downstream 821443 9429857 ~ 9429944 (+)

Expression


Co-expression Network