XLOC_013871


Basic Information

Item Value
gene id XLOC_013871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8760872 ~ 8761674 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029874
ATGAATGTAAGTCATCTGCCAATTGTTCGTCACTGCATAATGCATCGAGTTTTTATAAAATCCTTTTGTGTTTCATCCAGTTATACGTTGGACTGGCGAGATCAGATGTCAGTTATTGTTAATCTGCTCCTCCTGATAGGTGGAGGTGGAAATTGCTCCGTACGGATCCACAACGGTTTGAGCACAACGCACGATGGTGCCAAACAAGAACAGGCAgaggagaaaaagaaagaagaggGCAAAACCCAAATCCACATCGACCTCCACCCATGCCGGTGGCTCAGGCTGGTCCATCTGCCAATCTCCAAGGTGGCTCGTGCTAAGAAAAAGATCCACCAGAGCTTTTCAATTAAAGTCCACTCCAAACCTAGACGGATCATTCTCCCACAAAAgAGATCTTCGGTGTATCCTTGCCAATTGGAAGTGGAGTGCAGAATAAAGCACCATCACCCTGATTAAGAAGGAACATCATTATCAAATTAAAGCTGTAACACCATACAGGTAACTTAATATTTGTCGTCCACATTTGATGTCAGATTAATTAAGGCATGATTGAACGCTATATGAATTATAAATCAACTGAAATATGAATAAACTTGACTGGCCGTCAGTTTGTGGCATTAGTTcataaacaaacaacagaaaGACGGCATATGGGTGCTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029874 True 666 lncRNA 0.42 2 8760872 8761674

Neighbor

gene id symbol gene type direction distance location
XLOC_013870 NA coding upstream 82900 8673682 ~ 8677972 (+)
XLOC_013869 snx27a coding upstream 112978 8612839 ~ 8647894 (+)
XLOC_013868 s100a10a coding upstream 152458 8506178 ~ 8608414 (+)
XLOC_013867 efna1a coding upstream 258551 8481802 ~ 8502321 (+)
XLOC_013866 NA coding upstream 336494 8422912 ~ 8424378 (+)
XLOC_013872 NA coding downstream 174661 8936335 ~ 8936623 (+)
XLOC_013873 crabp2b coding downstream 211368 8973042 ~ 8980038 (+)
XLOC_013874 scamp3 coding downstream 223523 8985197 ~ 9001483 (+)
XLOC_013875 si:ch211-81a5.1 coding downstream 242582 9004256 ~ 9017910 (+)
XLOC_013876 ash1l coding downstream 270399 9032073 ~ 9087619 (+)
XLOC_013865 BX545847.1 non-coding upstream 461762 8298994 ~ 8299110 (+)
XLOC_013863 CR936442.1 non-coding upstream 792205 7966116 ~ 7968667 (+)
XLOC_013862 NA non-coding upstream 795452 7961521 ~ 7965420 (+)
XLOC_013887 BX005154.1 non-coding downstream 619776 9381450 ~ 9427416 (+)
XLOC_013888 dre-let-7d-2 non-coding downstream 668183 9429857 ~ 9429944 (+)
XLOC_013889 dre-mir-125a-2 non-coding downstream 682098 9443772 ~ 9443878 (+)
XLOC_013893 BX927218.1 non-coding downstream 989401 9751075 ~ 9757016 (+)

Expression


Co-expression Network