XLOC_013873 (crabp2b)


Basic Information

Item Value
gene id XLOC_013873
gene name crabp2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8973042 ~ 8980038 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027721
CAGCGCACAAACagactgagagagagaaagatcgCTGAACACCGGCGGATGAGAGAGGAGAAAGAAAGTgagacagagagggagagagcagCAGAGTGAAAGAAAGACACGCAGAAACATGGAATCTAACACGGAGAAAACATTCGCGGACTTTTCTGGATCCTGGAAAATGAAAAGCTCCGAAAACTTCGAGGAGCTTTTGAAAGCGCTCGGTGTAAATGTCTTTCTTAGGAAGATTGCAGTTGCAGCAGCTTCCAAACCAGCAGTTGAGATCTCACAGCAGGGGGAGAGCCTGTCTGTTCAGACCTCCACCAGCGTTCGGACCACTCATGTGTCCTTCACGGTGGGCGAGTCCTTCAATGAGACTACGGTGGATGGACGACCATGCACAAGTTTTCCGAAATGGGAAACGGACTGTAAAATCTCTTGCGAGCAGACGCTACAGAAGGGGGAGGGGCCTGAGACATCATGGACACGAGAACTGACCAATGATGGCCAGATGATTCTCACTATGAGAGCCGGAGATGTTGTCTGCACTCGGGTGTATGAACGAGATTGAAGGATCTGAGTCCACTCCATCTCAACTCAACTGTCATTTTGTGGAGGAAGAAAAAAATGCTAGTTTATTACTGCACAAATTCCCTGTCCTTTCACCCTTTTGTTTGACATATTAGGTTTGTAAGTCAGAGAAAGAAAGGTGTTTGAAGGATCAGACATTGTGGTAAGACtgtacaataacagtacatgaataatgatgtactaaTATGTAAACCAAACATTGCTCTATTATGAACTAATGGTGAGTTTATGCATATGCTAATCATAAACTAAATTTGACTACAACATGAGTCATTTGttagttcattttaaatgtattatttaactcCTTAGTTTAAGCTAAACGCAACTTACATGAACTCATGACCTGCTAATGTATATTTATGCaatgactttacttgaaggggcacatTATCATTAACTCATTCTTACTCAGGAACTCCTttgtttaaactgttcattttGGTGTACACAACACTACTGTTCTactgtttttcaatgtaaacacacacttgAGGGACGTACATGACATTGCGTTTAACACAAGAGTTCATGAGTTATTAAGAATGAGTTAATAAttatgtgcccctccaagtaaagtcatgacagaACTCTTTTtctgtagttaaagttagttgaaggggcacattatcattaactcattcttaactactcatgaactcccctgtttaaactgttcattttGATGTaaacagaacacttttctattgtttctcaGTGTAAACACACACTTGACGGACATACAAGACTGTTACGTACAAACACAGGAGTTCATAAGTCATAAAGAATGAGTGAATAATTaagtgcccctccaagtaaagtcatgaaaGAATACTTTTtctgtagttaaagttaattgaAGGGGCACATCATCAATAACTCATTATTAACTACTCAAACCTCTTTGTCTTAAACGTTCATTTTGGTGTAGACAGAACACTTTCTATTGTTtctcaatgtaaacacacacttgATGGTTGCACATGACCGTAACATTTTAACAGAAGAGTTCACGAGTCCTTAATAAGTTCATGATAATGAACCTCTCcgagtaaagtcatgacataaagaTACATTACCAGGTCATGAGTTCATGTAAGCTACATTTAGCTAAAATTGAAGTGTTGattaatacattcatttacaaacatgaactaacaattaaTTATAACCTAGGCTCATTTTGATTATGTACCttgatatacatttttggagagcaccaaatacatcccaggagctaaattttttgcagtttttgttttcgcgactccaccagaggccgatgtgtacactttttgagatctcaaatttctcttgcgagggccattcgtgcctgctgttctcaagaAAATcccccagaggccgctgtcgactgactgactaaccaatcCCCCTATCcactgtcaggattctgccactctggtcttgttaaTCCTTGTTTTAGTGGCAGaatccagacactagtcctgtcatgtcttgtgttgtgttgtgctCGACTTGAGTTTTCACGGGTCGAGCACAGCTTTTGCAATTGTGTTTGTCTCTGTATGAGCGCCATTTGTGAGCACGCTTTGACCGTGCGCGTTCCCCCTTGATGCGGGCGCGTGAGGTCCGGACGTGTTTGCAATTGCGCGCTCTTGCCCGGGTGTTCGTTCTGCAGCGTAGTGTTTCATTCctagcgtctcagtctagttggtttcggtcggcgctgagatgaaacatgcaagctgtgtgtgtgagtgcacggtgagtgttttcattcatcgtgtactcgtgtctCGCGTTCAGTCTTTTGCTGGTGTTGTGTTTAGAACGTGGTTCATGTTTACTtgaatgagttctctcattggctgtgtgttctagtctcgttttatgtgagcggatggcttgtgttgtctctttgtgtcatgtgctctcccgtctattgtctagtcctaCCCTCCTTGTtgacccattattagtttattagattcacctgtttgtgttaatttatttttgcttatattctcctcatgtctgctgtcctgtgccagttcgtcgtcgattatttccctgtcctgttgtgtccagccctgcCTTTTcctgcctgcccagtcaagtttgttttttgccttttaattaatgttttccccctctggttagtttgttttgcctcttcttgttttattcttattttacaaTAAAGGATTTTGTCTGCAAttgggtcctcgctccttttccccaacCTCCGACCGTGACACCCACCCCCTTCCATaaacgatagtgttttcaaaagcaccgattgacccacatCCCTAAGCCCAACCgacattgttttcaaaagcaacccaGAAGCCCTAGCCCTCACCGCagcttgatttttaccacattttcagattttaccacattctcacccagttatttacttgtttgttcaCCAAATTCGAACCCTATCATTACGGTCAACTTCGCTCTGCTTCTCAAATCctccgacgtacatggcgagcccctggaaagccgtccacatggaggtaagcagtcagctgaaTAGCACAAAAAGGAATgacatcataccgccctgtagcattcgttttgaAAACGAAATGCAGACATACGCTCCTTTGATCTCgtgatttccagaaatgtatatagggctatgttttcagaatgagcctaaggTAGCTGTTATTCATTCATGAACTCAAAAGTTAGTTCATAATTAGCGCATGTCTTAATTCATTATTAGTTCTAAATGAAGTAATGTTTATTACATATTAGTATAtaattattcatgtactgttattgtacaGTGTTTCCCCAGTCGTACTTGTTTAAAGATGGAAGAATTTTGACGCATTATCtgaaaattgtatttattgttattgtttgtgCCTTTAATGTTGCAGTTTCATGTATATACCACAATGTGGCTTATCGATCAGAAATGTTTTTGgcaataaaactttacacatGTAAA

Function

symbol description
crabp2b Predicted to enable lipid binding activity. Acts upstream of or within hindbrain morphogenesis and regulation of retinoic acid receptor signaling pathway. Is expressed in several structures, including eye; neural keel; neural plate; optic vesicle; and pectoral fin. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2).

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-52 Predicted to enable lipid binding activity. Acts upstream of or within hindbrain morphogenesis and regulation of retinoic acid receptor signaling pathway. Is expressed in several structures, including eye; neural keel; neural plate; optic vesicle; and pectoral fin. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2).

Ensembl:

ensembl_id ENSDARG00000030449

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027721 True 3535 mRNA 0.41 4 8973042 8980038

Neighbor

gene id symbol gene type direction distance location
XLOC_013872 NA coding upstream 36419 8936335 ~ 8936623 (+)
XLOC_013871 NA coding upstream 211368 8760872 ~ 8761674 (+)
XLOC_013870 NA coding upstream 295070 8673682 ~ 8677972 (+)
XLOC_013869 snx27a coding upstream 325148 8612839 ~ 8647894 (+)
XLOC_013868 s100a10a coding upstream 364628 8506178 ~ 8608414 (+)
XLOC_013874 scamp3 coding downstream 5159 8985197 ~ 9001483 (+)
XLOC_013875 si:ch211-81a5.1 coding downstream 24218 9004256 ~ 9017910 (+)
XLOC_013876 ash1l coding downstream 52035 9032073 ~ 9087619 (+)
XLOC_013877 si:ch211-81a5.5 coding downstream 111635 9091673 ~ 9107063 (+)
XLOC_013878 setdb1a coding downstream 131512 9111550 ~ 9147533 (+)
XLOC_013866 NA non-coding upstream 548664 8422912 ~ 8424378 (+)
XLOC_013865 BX545847.1 non-coding upstream 673932 8298994 ~ 8299110 (+)
XLOC_013887 BX005154.1 non-coding downstream 401412 9381450 ~ 9427416 (+)
XLOC_013888 dre-let-7d-2 non-coding downstream 449819 9429857 ~ 9429944 (+)
XLOC_013889 dre-mir-125a-2 non-coding downstream 463734 9443772 ~ 9443878 (+)
XLOC_013893 BX927218.1 non-coding downstream 771037 9751075 ~ 9757016 (+)
XLOC_013895 NA non-coding downstream 858144 9838182 ~ 9866722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_04510676_04512993 CRABP2B, CRABP2 coding CI01000321 null 4510361 ~ 4513568 (-)