XLOC_013874 (scamp3)


Basic Information

Item Value
gene id XLOC_013874
gene name scamp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8985197 ~ 9001483 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027722
AGCAGCGATACACAAGCGCTGTCAGAGTAAAATCGAAACAAAACCGTGTCGCTTGTCAAATTTAACAAAGGGAAATACATAAACAGTTGATAATACCAAAGAAGACTGAAAACCACTGTAAAAAAGGGACAGTATGTGCTAACGTTACTGATTTGAAACGGACACCTGACGTCTCGCTGTAATGTTGGTCGGTTAGCTAGTTAGTGTTAACCGGTTGCGGCGTGATTTGTTTTGCTTGAATTGTGTTATAATAACTAGGAACTTACCGAACTGGATTGAGGTTTACCGGTAATTATCCGCTAAACAACACTGTTTCGCTTTGTATCTGGTCATCGCCTTTGAGTTAAACCTGTTTTTACATCTTGGCGAGATCTAAACCAGCACCAAGATGTCAAAATACACAACTTTTCCCGATTCGTCTGATGATCATAACCCATTTCAGGATCCATCAGTGACTCAGCACAGCAGCAACACTGGCTATGCCACGCTGGACCTCTACAACCCATTCGACAACAACCAAACAGCGCCTCCACCTCCCTATGAAGCCACATCTCCTGCTGCGCCCCCTGCCCAAACGCCTCCCAGCAGGACCACGCCAACTGAACCCAGGAACTATGGATCCTACGGGTCACAGTCTGCAGTAAATGCCACCACAGCAGATCTGTTGAAGAAGCAGGAGGAGCTGGAAAGAAAAGCACAGGAGCTGGAGAGAAGAGAAAGAGAGCTGAATGCTCATGCACTTGGATCTGGAGCCTGTGAGTGAGGGAATCAGAGAAAATAGCTTGATATTATTGAgataattaatgtaattatatgTAAAGGAAATGATTTGACTTTTACTGCTGGCATTGTGTATATATGTGATGGCAGTTTtcagtttgttttgcttttaataaTCCTTGTAATGCTTAAAATGACTCAAAATTTTAAAACTCACA
>TCONS_00027723
CGAAACAAAACCGTGTCGCTTGTCAAATTTAACAAAGGGAAATACATAAACAGTTGATAATACCAAAGAAGACTGAAAACCACTGTAAAAAAGGGACAGTATGTGCTAACGTTACTGATTTGAAACGGACACCTGACGTCTCGCTGTAATGTTGGTCGGTTAGCTAGTTAGTGTTAACCGGTTGCGGCGTGATTTGTTTTGCTTGAATTGTGTTATAATAACTAGGAACTTACCGAACTGGATTGAGGTTTACCGGTAATTATCCGCTAAACAACACTGTTTCGCTTTGTATCTGGTCATCGCCTTTGAGTTAAACCTGTTTTTACATCTTGGCGAGATCTAAACCAGCACCAAGATGTCAAAATACACAACTTTTCCCGATTCGTCTGATGATCATAACCCATTTCAGGATCCATCAGTGACTCAGCACAGCAGCAACACTGGCTATGCCACGCTGGACCTCTACAACCCATTCGACAACAACCAAACAGCGCCTCCACCTCCCTATGAAGCCACATCTCCTGCTGCGCCCCCTGCCCAAACGCCTCCCAGCAGGACCACGCCAACTGAACCCAGGAACTATGGATCCTACGGGTCACAGTCTGCAGTAAATGCCACCACAGCAGATCTGTTGAAGAAGCAGGAGGAGCTGGAAAGAAAAGCACAGGAGCTGGAGAGAAGAGAAAGAGAGCTGAATGCTCATGCACTTGGATCTGGAGCCTCACGTCAGAATAATTGGCCCCCATTGCCCTCCTTCTGCCCGGTGGGACCGTGCTTCTATCAGGACATTAATCTGGAGATTAGCCAAAGCTTCCAGCGCACCGTCACCACCATGTACTACTACTGGATGTTCACAGCATGCACTCTGCTCATTAACCTCATCTCCTGTTTGGCTGTCTTCTGTGTGGATCCCAATAATGGAGTGGGCTTTGGTCTTGCCATTCTCTGGTTTCTCCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTACAAAGCCTTCAGGAGTGACAGTTCCTTCAACTTCTTTGCATTTTTCTTTGTGTTCTTCGCCCAGTTGGTGCTTTATGTTATGATGACTATTGGGATCCCAGGTTGGGGTTTCAGTGGATGGATCGTGAGTTTAGCCGCTCTCAGCACGAGTAAGGCCGTGGGTGCCATCATGATGATGAACGCTGTGCTCTTCACTGCACAGTTGGCTATGGGAATAGTGCTGCTCAAGAGGGTTCATTCTATGTACAGACAGACCGAGGCGAGCTTTGAGAAAGCCCAGGCTGAGTTCGCCACCGGTGTGCTGTCCAATCAGGCCGTGCGCCAGGCAGCCACCAACGCCACCGTTTCCGCCGCACAGGGTGCCTTCACTGCACCCCGATAGAGGAAAACAAATGAGGTTCAACGGCATCACTGGTTAAACAGCCTTGAGACAAAGTGACTTATTCTAGCACACTTAGTCAACCAACACACTTGCATGCACACCAGGTAAAACAAACTCATAACCATAGTAAAACTACACTGGACTTCTTTTTGAATTCGTTTATTGGTTCAGCCGTGTAAAAAGGATCTTGATTTGAAATGATGGTTTTTACATATGTACTCCATCGATCACGCTAGAAAAAGTCACTCATAATTCTAAAGATAACAAAAATACCTAAGACCCCCGAGTTTGTCTCTCTTTACATCCCTAAAGCTTGTGTAAGGTCTCGTTAGCAGACGTGCCACATTCTGCCTTCACTTTATCCTTGACTTTCTTCCTTATTGTGTGTAAATAGCTGTTAACGGCCATGAAAgggatacaaaaaaataaagctgaacttGCCAAACGTTTTTCTTCAGAAGTCGAGGAATATCATAGTTTAGAGATTTATGATTCACTTGATTAGTCTGTTGGTGGGTGGATTTCTTGCTTTGACTTTTATTTATGAAAACGCATGTTCAACTACTGTATTTACCTCTTTGACACCTGACTAATGGTTTATTTTCCTGAACTAGAGCTTCGGATTACTGAATCAAACTTGATACGTTGATATAAAACTCCAGTTTTCTTATCAAACTACAGTTGCGGAGATCGTTGTGGCCAAAATATGTATTGCTTTTGTGATTTGTAGCCTTTTTTTTCCACAAACCTTTGTCCTACACTATAGTAAATGCCTAAATGAAGTATTA

Function

symbol description
scamp3 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP3 (secretory carrier membrane protein 3).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-33 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP3 (secretory carrier membrane protein 3).

Ensembl:

ensembl_id ENSDARG00000016765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027722 False 938 lncRNA 0.43 4 8985197 8991685
TCONS_00027723 True 2169 mRNA 0.45 9 8985230 9001483

Neighbor

gene id symbol gene type direction distance location
XLOC_013873 crabp2b coding upstream 5159 8973042 ~ 8980038 (+)
XLOC_013872 NA coding upstream 48574 8936335 ~ 8936623 (+)
XLOC_013871 NA coding upstream 223523 8760872 ~ 8761674 (+)
XLOC_013870 NA coding upstream 307225 8673682 ~ 8677972 (+)
XLOC_013869 snx27a coding upstream 337303 8612839 ~ 8647894 (+)
XLOC_013875 si:ch211-81a5.1 coding downstream 2773 9004256 ~ 9017910 (+)
XLOC_013876 ash1l coding downstream 30590 9032073 ~ 9087619 (+)
XLOC_013877 si:ch211-81a5.5 coding downstream 90190 9091673 ~ 9107063 (+)
XLOC_013878 setdb1a coding downstream 110067 9111550 ~ 9147533 (+)
XLOC_013879 clk2a coding downstream 148531 9150014 ~ 9169225 (+)
XLOC_013866 NA non-coding upstream 560819 8422912 ~ 8424378 (+)
XLOC_013865 BX545847.1 non-coding upstream 686087 8298994 ~ 8299110 (+)
XLOC_013887 BX005154.1 non-coding downstream 379967 9381450 ~ 9427416 (+)
XLOC_013888 dre-let-7d-2 non-coding downstream 428374 9429857 ~ 9429944 (+)
XLOC_013889 dre-mir-125a-2 non-coding downstream 442289 9443772 ~ 9443878 (+)
XLOC_013893 BX927218.1 non-coding downstream 749592 9751075 ~ 9757016 (+)
XLOC_013895 NA non-coding downstream 836699 9838182 ~ 9866722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_04496126_04503083 SCAMP3 coding CI01000321 null 4495451 ~ 4503083 (-)