XLOC_013875 (si:ch211-81a5.1)


Basic Information

Item Value
gene id XLOC_013875
gene name si:ch211-81a5.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9004256 ~ 9017910 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027724
ATCGTTCTGGCTGACGCGTCTCCTTGACAGCAGCCCTCCGTCACGTCAGAGTTAATTCAGTCGCTGCTTCTGAGTGAAGATGGCGGAGGCCGCTGCTGCTCCACGACACCGGTTCTTCTGTCACTGCTGTAAAGGTGAAATAGACCCAAAGCTACCGGAATATGTATGTCCCAGATGTGAATCTGGCTTTATTGAAGAGGTGTCAGAAAACTTCAGTCTTCTTCAGAATCGGGATGGTGCTGCTGGGACAGGCAGTGATGACATGACCTCACAGTTTGCTGAgCTGTGGCAGCTGCTCTTCATGGAGCATTCAGCCCTGCTCTCCGAGCCCTCGGTCACAGACGCGCTCCGCAGCTCCGGGCTCCAGCCAGCAGTTGCTGATCCTGCCTCTGGGACGGCGGGACCTGTGGCATCCGTCGAGAGTCTGTCAGACTGCACCGAGCCTCAACAAAACAGCCCACAGACAAACTCCAGACAGGATCAGGGACAGGCTGTGGAGGGGTCCAGCGCGCTGCACTCAAACCCTGGAGACTATGCTTGGGGACAGGGAGGTTTGGATGCGGTCGTAACACAGTTGCTTGGTCAGTCTGAAAACAGCGGCCCCCCTCCTGCCGAGAAGGAGATGATCTCATCTCTGCCCACCGTTAGCATCTCCTCAGAGCAGGCTGcATGCCGGCTGGAATGCCCCGTGTGTCGAGAGGAGTTTTCTGTTGGGGAATCTGTCCGACAGCTGCCGTGTCTGCACTACTTTCACAGCAGCTGTATTGTGCCCTGGCTTCAACTGCACGACACCTGTCCTGTCTGTCGGAAGAGTCTGGATGGTGAAGACCGGGGTTTTCAACCACGACCAGATCCTCAAGAAACAATCCCATCACCTCCAGATTTACCAGAACGAAGCACCTTCGAGACTCTTTAG
>TCONS_00027725
CCTTGACAGCAGCCCTCCGTCACGTCAGAGTTAATTCAGTCGCTGCTTCTGAGTGAAGATGGCGGAGGCCGCTGCTGCTCCACGACACCGGTTCTTCTGTCACTGCTGTAAAGGTGAAATAGACCCAAAGCTACCGGAATATGTATGTCCCAGATGTGAATCTGGCTTTATTGAAGAGGTGTCAGAAAACTTCAGTCTTCTTCAGAATCGGGATGGTGCTGCTGGGACAGGCAGTGATGACATGACCTCACAGTTTGCTGAgCTGTGGCAGCTGCTCTTCATGGAGCATTCAGCCCTGCTCTCCGAGCCCTCGGTCACAGACGCGCTCCGCAGCTCCGGGCTCCAGCCAGCAGTTGCTGATCCTGCCTCTGGGACGGCGGGACCTGTGGCATCCGTCGAGAGTCTGTCAGACTGCACCGAGCCTCAACAAAACAGCCCACAGACAAACTCCAGACAGGATCAGGGACAGGCTGTGGAGGGGATTGTACAGCAGTTCCTGGCAGGTCTGTTTTCCAATTCAGACAGTGCAGGTCCCCAAACCTCCTCATGGTCCAGCGCGCTGCACTCAAACCCTGGAGACTATGCTTGGGGACAGGGAGGTTTGGATGCGGTCGTAACACAGTTGCTTGGTCAGTCTGAAAACAGCGGCCCCCCTCCTGCCGAGAAGGAGATGATCTCATCTCTGCCCACCGTTAGCATCTCCTCAGAGCAGGCTGcATGCCGGCTGGAATGCCCCGTGTGTCGAGAGGAGTTTTCTGTTGGGGAATCTGTCCGACAGCTGCCGTGTCTGCACTACTTTCACAGCAGCTGTATTGTGCCCTGGCTTCAACTGCACGACACCTGTCCTGTCTGTCGGAAGAGTCTGGATGGTGAAGACCGGGGTTTTCAACCACGACCAGATCCTCAAGAAACAATCCCATCACCTCCAGATTTACCAGAACGAAGCACCTTCGAGACTCTTTAGCCTCTTTCCTGCCTTTATCACTTTAATTATTCACCAGTGCTTCATGAAGCCTCTACAAAGACCTCAGGTGCCTTCTATTTCATTTTAGTCCAGGCAGAAAACCAAATTTGAGATGTCAAAAGCAACAACAAATGGTACTAATATACACTCACAGTGTACTGCTATATGAAATCATGATCGTAATGTTTTTATCCTGAtaaacagtagctatgtttctattCAAATATGCAAACTAGACTTATGAGCAAAACTCAACACAGgt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-608 Predicted to enable metal ion binding activity. Orthologous to human RNF115 (ring finger protein 115).

Ensembl:

ensembl_id ENSDARG00000062900

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027724 False 916 mRNA 0.56 8 9004256 9017648
TCONS_00027725 True 1226 mRNA 0.51 9 9004277 9017910

Neighbor

gene id symbol gene type direction distance location
XLOC_013874 scamp3 coding upstream 2773 8985197 ~ 9001483 (+)
XLOC_013873 crabp2b coding upstream 24218 8973042 ~ 8980038 (+)
XLOC_013872 NA coding upstream 67633 8936335 ~ 8936623 (+)
XLOC_013871 NA coding upstream 242582 8760872 ~ 8761674 (+)
XLOC_013870 NA coding upstream 326284 8673682 ~ 8677972 (+)
XLOC_013876 ash1l coding downstream 14163 9032073 ~ 9087619 (+)
XLOC_013877 si:ch211-81a5.5 coding downstream 73763 9091673 ~ 9107063 (+)
XLOC_013878 setdb1a coding downstream 93640 9111550 ~ 9147533 (+)
XLOC_013879 clk2a coding downstream 132104 9150014 ~ 9169225 (+)
XLOC_013880 si:ch211-81a5.8 coding downstream 156256 9174166 ~ 9179858 (+)
XLOC_013866 NA non-coding upstream 579878 8422912 ~ 8424378 (+)
XLOC_013865 BX545847.1 non-coding upstream 705146 8298994 ~ 8299110 (+)
XLOC_013887 BX005154.1 non-coding downstream 363540 9381450 ~ 9427416 (+)
XLOC_013888 dre-let-7d-2 non-coding downstream 411947 9429857 ~ 9429944 (+)
XLOC_013889 dre-mir-125a-2 non-coding downstream 425862 9443772 ~ 9443878 (+)
XLOC_013893 BX927218.1 non-coding downstream 733165 9751075 ~ 9757016 (+)
XLOC_013895 NA non-coding downstream 820272 9838182 ~ 9866722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_04483181_04491284 NA coding CI01000321 null 4483120 ~ 4491284 (-)