XLOC_013889 (dre-mir-125a-2)


Basic Information

Item Value
gene id XLOC_013889
gene name dre-mir-125a-2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9443772 ~ 9443878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027758
GATCAGTCCAAATCGATGTATGTCTGTGTCCCTGAGACCCTTAACCTGTGATGTCTTCCAAGGTCACAGGTGAGGTCCTTGGGAACACGGCTGTATATGATGACGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081044

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027758 True 107 miRNA 0.50 1 9443772 9443878

Neighbor

gene id symbol gene type direction distance location
XLOC_013888 dre-let-7d-2 coding upstream 13828 9429857 ~ 9429944 (+)
XLOC_013887 BX005154.1 coding upstream 16356 9381450 ~ 9427416 (+)
XLOC_013886 si:ch211-288g17.4 coding upstream 79430 9344171 ~ 9364342 (+)
XLOC_013885 si:ch73-15n24.1 coding upstream 103637 9295244 ~ 9340135 (+)
XLOC_013884 si:rp71-15k1.1 coding upstream 152045 9277327 ~ 9291727 (+)
XLOC_013890 si:ch211-288g17.3 coding downstream 11340 9455218 ~ 9460322 (+)
XLOC_013891 fam131ba coding downstream 89130 9533008 ~ 9604115 (+)
XLOC_013892 styk1a coding downstream 223083 9666961 ~ 9683578 (+)
XLOC_013893 BX927218.1 coding downstream 307197 9751075 ~ 9757016 (+)
XLOC_013894 cacng6a coding downstream 342844 9786722 ~ 9798248 (+)
XLOC_013872 NA non-coding upstream 507149 8936335 ~ 8936623 (+)
XLOC_013871 NA non-coding upstream 682098 8760872 ~ 8761674 (+)
XLOC_013870 NA non-coding upstream 765800 8673682 ~ 8677972 (+)
XLOC_013895 NA non-coding downstream 394304 9838182 ~ 9866722 (+)
XLOC_013906 CR384101.1 non-coding downstream 1123493 10567371 ~ 10567486 (+)
XLOC_013918 CU628002.1 non-coding downstream 1569744 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 1834535 11278413 ~ 11278529 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_04238830_04241926 NA misc CI01000321 null 4236453 ~ 4244068 (-)