XLOC_013895


Basic Information

Item Value
gene id XLOC_013895
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9838182 ~ 9866722 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029876
CCAGATTACAAAGAAGAAATGCCACAGtctcagtaataataataataataataataataataataataataataataataactgtcaTCATCATCTTAAGTATCAGGCACAATTGCTTTGGCATTATGGAATGAAAGGCATGCGAAGCTGAAGAAACAGAAAACTAAAAAACATTTagctgagagagaaaaaaaatcgagAAATGAAAGGTAAAAGAGGAGAAGACAAGTCAAATGAGTGAGGCCGTTTTAGCTTAATGGGACTTCGAGAGAGACAAATCAAGACAAAGGACAGACCACGGGGAGAAAGCAGAATAATAAAAACCCTTAGAGGAAAAGGCTATgaagatgaaaaaataaataaaaaatgtcatgcaaaatggtacatacatatttataagcCAGACCCTCAGCGTAGAcggcaacaacaacaaatgtcaaCTGGAACTGCGAGAGCAGAAAGCTCATTATAACGCAATTATtagcaaaacacaaaaacataaacatataTTCACATTTTTCAGACTTAAAAGCAGACTAAATTTGTACCATCAGCAATGCTTGAATAAATATTAGGATCCAAAATCATTCCCTCTACTCTTTTCAGTTTCCATAAATCAAACCTTCATTTCTGCATATTTCTCGCATAATATGGCTATAATATAGATTATTATTCTATGAATTTCTTTTCTATCCAGCAGGAGCCAGTCCTGTTCTTCattactatttatatttatataactatTTATCTTGACAATATTTACACACAATGATGAACTCTATCAGTTATAACACTCTGGAAAATATTTCAAGCTTTTGTGCATGATAATATTAAGAGGTAATTAAGATAATCTCTGTTAGTTAACATACTTTATTTTTGAGCTATTTTTCTACAAAGGTCAACATATAGGCATTAGGAAAAATTAGATTTTTCGGTTTAATAttcatactgtacaaactgtcCTTACTGCATTGCTCAATCGATGCAGCACCGCAGGCACCAGGTATGGAAGTGCTGACTCATCTGCCTCGTTTTAGTCAATGAATCGAATACAAATTTCATTTAGCCCTGCTTGTGGTTCTGACTAGTCATTCTTTAATGCACTAATAATTCTTCGCCACTAGATGGCGCAGTTTACTAGAGGTGGAGAACAAAATCATATTGCTTTGTGCCAGAGCCGTAACTGCCATAGACATTGAGGGAAACATGACTGCTTATGAACAAATTGTCCTTCTAAGTGTTCGATATTGATGCTGTTTGTTGACAGAGAAGAAAATCGATAAAAAGGCGGGCTTTGCTGTTTAACGTTACTGAACCCAGAGACAAACACAAATTTCAGCTCGATGCTTCCGTTTTTAACGGTGAAAATTATGAGGTATTGAATGCGGAGGAGCTCTAACACGGGGATGCGCTCATACGCATATGCGCATGATAACGAGGAGGCGGGACTGCAGATGGGGGCGCGGCCATTGGGAGAGACTGAGGGACGTGGCTGCTGGAATGGGAAGAGTGGATGGTGTGAGGataggaagaggaggaggaggaggaagcagGTGGGAGGTGATAACTGGCCCCGGAGGAGGGGCCCGAGGAAGAGGGCGGATTAGATGGCCCGCTGCCTTTCGTTTGAGGAGGCAGGGGGGTCTGGTTGAGCTGAATGGAGATGTCGCTGGACACCTCAGAGCCGCTGCGTCCACGTTGAGGAGGAGGCCACGAGTCGGGGTGCAGAATTTCTAGTTCCTGTTTCATTGGGTGGCAGGATTTGGGAGGGTGATGCAATAGGATGCCACACCAGCGCAAGGAGAGAAGACCAGCTGCAGAACATGGCAGGATGACCCACGAGCAAACCGCAGCTTAACCAAgaaatcagtcaagtttggtgaagaaaaaaacaagGTTGGGATTAGATTTAGTCTGGGGGCATGAgagagatctacagagtggatggtaacatcaacagcctgaggtatcaaagacatttgtgctgcccattacattacaaaccacagaagagagCAAATTCTtaagcaggatagcgctcctcatacttcagcctccacatcaaagtttctgaaagcaaaggaggtcaaggtgctccaggattggccagctcagtcaccagatataaacattattgagcatgtctggggtaagatgaaggaggagggaCTGaagatgaactctaggagtcctgctttctttgccattacagATGACTTAATTAATACGTAATTTGAGTCATTGCACAGATGTATGgctgcagtcgtccaagctcatgggagtcatacacaatattaattcgttttccactgcagcatgactttatatgctatactatacattatttcagttaagtgacgacttttgtctaagcaaagtcagactgttctaattgaataattaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029876 True 2407 lncRNA 0.40 5 9838182 9866722

Neighbor

gene id symbol gene type direction distance location
XLOC_013894 cacng6a coding upstream 39934 9786722 ~ 9798248 (+)
XLOC_013893 BX927218.1 coding upstream 81166 9751075 ~ 9757016 (+)
XLOC_013892 styk1a coding upstream 154604 9666961 ~ 9683578 (+)
XLOC_013891 fam131ba coding upstream 234067 9533008 ~ 9604115 (+)
XLOC_013890 si:ch211-288g17.3 coding upstream 377860 9455218 ~ 9460322 (+)
XLOC_013896 tmem238a coding downstream 464603 10331325 ~ 10333333 (+)
XLOC_013897 rcvrn3 coding downstream 472816 10339538 ~ 10352579 (+)
XLOC_013898 necap1 coding downstream 529320 10396042 ~ 10408029 (+)
XLOC_013899 si:ch211-171h4.7 coding downstream 606890 10473612 ~ 10476024 (+)
XLOC_013900 si:ch73-160i9.3 coding downstream 619125 10485847 ~ 10500555 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 394304 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 408238 9429857 ~ 9429944 (+)
XLOC_013887 BX005154.1 non-coding upstream 410766 9381450 ~ 9427416 (+)
XLOC_013872 NA non-coding upstream 901559 8936335 ~ 8936623 (+)
XLOC_013906 CR384101.1 non-coding downstream 700649 10567371 ~ 10567486 (+)
XLOC_013918 CU628002.1 non-coding downstream 1146900 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 1411691 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 2428728 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 3078128 12944850 ~ 12944966 (+)

Expression


Co-expression Network