XLOC_013900 (si:ch73-160i9.3)


Basic Information

Item Value
gene id XLOC_013900
gene name si:ch73-160i9.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10485847 ~ 10500555 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027776
agagagggagagcagCTGGAAGTGATGTCAATGAactcaatgattttttatttgtctGCACACTGATCAAGACGACGCAAGAACCACATTCACAAATTGCAGTACTATGCAGTGGTGTTTCCTCAAAGACTGAATCACTGAGCAAGACTTCATTCAGACTGAAGAATGGCCTTCAATACAACTCTTCACACCCACTCCCACATTGATGTATCAACCCACCATGAGAAATCAACACTGGACGTTGATGCCATTATGGAAAATATTACCATTGTCCTGTACACCATTACCATCATCTTCGGCATCAGCGGGAACTCTGTGGTCATCTGGGTGGCAGGTTTTCGTCTTAAACCCAACGTCAGCAACGTTTGGTTGGTCAACCTTGCAGTAGCAGATCTGATCTTCTGCTTCACCCGAATCATTTCACTCATTAAAAACCTCTTCTTTGACTACTGGCCTTTTGGACTCTTTCTCTGCAAGTTCAATGGTTTCTTCAAGTACGCCAACATGTTCTGCAGTGTTTTTCTTCTGGCTGTCATTAGTGTGGATCGAGCGCTCTGCGTCTGGTGTCCGGTGTTCACCAGGAAACGACGGACAATATGTGCTGCTCGTGTGGTCAGTGTGGGAGTTTGGATCGTGGCTGTGATCTTTAGTTCGCCCTACTTTGTTTACCGGCAGGTCTACCTTGGTGACAACAATTTGAGCAAGTGCTCTCTGGAGGTTAAAGAATCATCGAAGGGCGACAATTCGGCAAAGAACGCCCTGTACAGCATTCGCTTCTTGTGTGGATTCCTGTTGCCTTTCTTGGTCATCCTGTGCTGCTACGTTCTAGCTGCTATTGGGATACGCAGAGCAAGGTTTTCTGGCAAATCGAAGCCCCTGCGCATTCTCGCTGCACTCGTGGTCGCCTTTTTCCTGTGCTGGGCCCCATATCACTGCCTGCTGCTCGCCAAGATGGTGGACAAGAAAAGCCAAATAGTCAAAGTGGGCCTGCCTATTGCTAAGGGCACAGCGTATTTCAACAGTTGCGTCAACCCGCTGCTCTATTTCTGCATGGGACTCAATATTAGGCAAAACTTTAGGCAAAGCATATCAGGGATTTATCGGAGAGCGCTTATGGAAGAAGTCCCCACTGTACAGTCTCAGGAAGGCACGGGGGATGAAAGCTGTAATTCCCTTTCGAAGACTACAGTACTTAATCGAGGAAGACCCAGGGGGTTGGCTAAAGTTTAAACGAGTTATATTGTAATCTTTGTTCTTTAGCAGTGACAGTCAGTTGTATAATTGTACCGGGAAGACTGATCAAATTAATGTGAAAGATCTATGTTGTCTGACAATTAAGCATTAAGactgtcaacccaggctcattctgaaaatgtacctcctacatacatttctggagaccatgaaatacgc
>TCONS_00027777
GCACACTACAGAAATCTTGGAAGGAGTGGGTCACTTCTCGTCTAATGTtagtcaaacacaatatttggACTCTGCTTACATACAGATTTTCACATACAGTATCCCTACGCAATCTCAAATGCAGCCATAATGTCTTAATGGGGTGGGACAAGTCAGATaccagagagcatttgattggtcagaagatttgataagaaactgaagtatgagttGACAAAAAAATGATGATCCATTTAGGcaaaagtgacaaactgcaagctttggatttTCATGGTCTTAATGTGGATTTTCTTAATGTTTTGGAGTACAATTGTCTATAGATATTCGTAAGGCTAACACACTGATACTGACatctaaaacactttattttgtttatctCTCAGAATGGCCTTCAATACAACTCTTCACACCCACTCCCACATTGATGTATCAACCCACCATGAGAAATCAACACTGGACGTTGATGCCATTATGGAAAATATTACCATTGTCCTGTACACCATTACCATCATCTTCGGCATCAGCGGGAACTCTGTGGTCATCTGGGTGGCAGGTTTTCGTCTTAAACCCAACGTCAGCAACGTTTGGTTGGTCAACCTTGCAGTAGCAGATCTGATCTTCTGCTTCACCCGAATCATTTCACTCATTAAAAACCTCTTCTTTGACTACTGGCCTTTTGGACTCTTTCTCTGCAAGTTCAATGGTTTCTTCAAGTACGCCAACATGTTCTGCAGTGTTTTTCTTCTGGCTGTCATTAGTGTGGATCGAGCGCTCTGCGTCTGGTGTCCGGTGTTCACCAGGAAACGACGGACAATATGTGCTGCTCGTGTGGTCAGTGTGGGAGTTTGGATCGTGGCTGTGATCTTTAGTTCGCCCTACTTTGTTTACCGGCAGGTCTACCTTGGTGACAACAATTTGAGCAAGTGCTCTCTGGAGGTTAAAGAATCATCGAAGGGCGACAATTCGGCAAAGAACGCCCTGTACAGCATTCGCTTCTTGTGTGGATTCCTGTTGCCTTTCTTGGTCATCCTGTGCTGCTACGTTCTAGCTGCTATTGGGATACGCAGAGCAAGGTTTTCTGGCAAATCGAAGCCCCTGCGCATTCTCGCTGCACTCGTGGTCGCCTTTTTCCTGTGCTGGGCCCCATATCACTGCCTGCTGCTCGCCAAGATGGTGGACAAGAAAAGCCAAATAGTCAAAGTGGGCCTGCCTATTGCTAAGGGCACAGCGTATTTCAACAGTTGCGTCAACCCGCTGCTCTATTTCTGCATGGGACTCAATATTAGGCAAAACTTTAGGCAAAGCATATCAGGGATTTATCGGAGAGCGCTTATGGAAGAAGTCCCCACTGTACAGTCTCAGGAAGGCACGGGGGATGAAAGCTGTAATTCCCTTTCGAAGACTACAGTACTTAATCGAGGAAGACCCAGGGGGTTGGCTAAAGTTTAAACGAGTTATATTGTAATCTTTGTTCTTTAGCAGTGACAGTCAGTTGTATAATTGTACCGGGAAGACTGATCAAATTAATGTGAAAGATCTATGTTGTCTGACAATTAAGCATTAAGactgtcaacccaggctcattctgaaaatgtacctcctacatacatttctggagaccatgaaatacgccccaggagctacgttttttagcagtttttgttttcgcaacgCCTTTTGAGATCTCAAGTTTCTTtcgccattcgcacctgctgttcttgcgtaaacccaccagaggccactgttgactgactgactgaaagatcgactgacccaccatcctccttccctaaacacaaccaatttAATTGATTGATCTGTCCACCCACTTTCCCAACCAAACCAACCATTTtcaagcaatccagaaaaagaaaagcattcgtctgatttttatcatgtttttagattgtaccacattctcaccctgttatttactgtttatttattattttttttggattctgtctttgtcctacctgctttctggaaccgttcttttagacttgaaccctgtcgtcgtggtcaagtcctctctgcgtctcaaatctgccaacgtacatggcgagctaacaggacaaactggtcACAGCGGAAGAGCTGTCCATATGGACGTAATCGGTTAGCTGGTATGcatgaaaaggaatggcgtcatactgccccgttgctcatttaaaacatgaaatgcagccatacgaacATGGTAACATAATTTGgcgtctccagaaacgtatatagggctacctTTTCATGATAAGCCTATGTTGAAGACTATTTTGTACATTTACCTGGAACTTTTATCGTGAAAAAACatgaaatagttcacccaaattctgtcataatttactctcccttaacttgtttattactttatttcatccgttaaacacaaaggaagatattttccAAAGAAATTTGGCAAACATATATaatgttgacttccatagtatttgttttttcttactatggaagtcattacTGGTCTTTCggctttcttcaaactatctccTTTCGTTTACAACTGGTAAAAGAAGTTGTAAAGGTTAGGAAACGCTTGTAGGAGTAAAACGTGagtacatttgtatttttgggtgaacaatcgctttaaaaaacattaaataatgaactgGTACTGTGTATATAGAGAGTAATTTTGAtgaatttgatttcttttttcatAATTCACACATGAGGTCAAAAACAGTTTACAAAGCCTGTTTCTGTCATACTAAAATGAGCAACTGTTTAACAGAGTATTTCTTCACAGCAAACCAATAAACTGTGGTCAGGTTTCCTGAAAAAAAGTCTCTGTAGATTAATGCACTTCTTCCACTTTAGGAACCACAGACTTTTGTTCCTCTTTTCTGATAAAGACATCCTAAAACTTCTTATCTTACGCCAGTAAATAAATTTCAATAACCACTAACTTTATTTCAGCacagtccctgatttatcaggaatCACCAGAGCTAAATGAACCAGTAACCCAGATCAAACGCTTCCCGTAAACTGTATTTAAACGGTGTTTAAGGCccgatttctttaaaaatgaacaatCTTCACTGCCTAAATGATATatgctataaataataataaataataataataataaataatttccaTTGCATTTTAAGTTTCAGACACTTAagcgtttttatttatttaatatagatTGGCAGTGAAGCGTGCATTTGTAgcatcaataattaagagtgctggtgaaaagaatataaaaaacacaacacagagaagtaatttgataaaaaaaacaacaatattattgcgttagagcttaaataaaccgTATAaggcaaaaacaacattatgtcCATATATTAATACCATagatacattagatgtcgcctaccgtgtctattggaaggaatgcgtcaatagagccgccatatTGGAACaaggtagcgctcctttgaaatgaatgcgggaccaaggtgcagtggaggattGTGGCCATTCAAAGCCAGagaaatacacatatacacatatatctatgatcgggagttttcctggatgttagtatgcatttttttttttaattacgaaaattataattttacatcacttttctacattgatggatcagtgaccggacgggcattcctgacaaaaagcgtgtgtttatgtgtacagaaatgtactatccaccctccctgttaaatttgatctaatccgtgtcctgaaacacaccacctctcctgctttcacttctcatactgatggaggaagcaattcgtttgtgaatgaatctctgttatgaacgactccttcaatAGCTGACAATATTagaagtttctggcagcgcagcatctcgttgtcatatattttttttttgcattgtttgctgattttattaaaccaaattcacataagccgagtatttagagCGAGTTGGAGCTATTTTGCCTCATgttgaatgcagtaagtgactgttatcatcaataacgtgacctgtttagcacaaaagttcgtaacatGCAAAAacgtcataaaaaaaaaaaaatcttacctatgaaatgttctgcctttgtgctttgatttctttgtttgctcgtttctacACCCATAGACAGCGCAAAAGTCccacatcttcacgtaataacactgtcttgactagtgcggttgaatgacatttgtcctgggagcactgtaccaatgtggcggcgctattgacgcaagctcagggtccctatgctaTATCtggtgtatatatctatgcattAATACAGCtcttctgtgtcagttaaatcaaatgactgttgaaattcaaaattttaaaCTGGTTGAGTGGTTTATAAATAACCCAAAAAAggttcaaaataacccaacaaagcaccaaatacttaacacaactggttgagttatttataaataactcaataaaagttaaaaataacccaacaaagcaccaaatatttttaactcaaccattgtgttaaagggccatgaaacccccttgtttcagcagggtgttttcacacctataCTTTGGAAAaggtcagaaaagtgggcgtgtccagctctgtttaggggggagtgtcaggaggaactaaagtgggatggtgtgggagtgtctatttgggcacgcgcgagtttcagagtcaaaatacacacacaggagaaagtgatggtgtttacatggacatctgtagtcgaattatttgccaaattattaaatgttggactttaactgcagtttggctctttgattcagggaattcattcatgcccctcgagacaaacgagatatttgattcgaggatctgctctaagcgtgtatttttcatgcaatgtttgataccgcacggcgaatgagagaaaaaaaccctccgcatttcccggaaacttagatgcacacggctgggagcgtcagaaagctgcgtgtgttattccggtcactaaatgcagtgaaaaacctacacgaggttaaagtttggttgtggtgctaacatgtttacactcggtgcaatagttaacttagttcgatacgaacaaactgaataaacaaagagcactggtcgctcacttaccaaatctgtagagacaggacaatcaccagcaactagagccgcatctttattaagagaagactacaagcgaatccggatctcagcgtttgcagatgagaacagctctcaggtaaacaataatcctccttagacacgtaagttattgttgtcgagcgtcgcgtacactgttaatccacacgtgactccagatgagctctcacagagagaaaatgaaaacaaaacttaacggcagcaaactgtaaaagcaacacttcacgcttgttttgccaacacaacgtggcgtctctgtcgtgtaaatacagtgacactaatgaatcttaatgaagttgcataatagagcgcgctgattggtttgaaccaagccttactcatgcattaatgcatcacactgtaagacgtaataagactcactctggcacagacgcccagtctgcacgctggaatacatgctattatgtcatgacagtgacgcagcttcaaaaattagtttcaaaccagaagtacgaatttgcttgaaataacgcaaaaacaaccaatttacattttttagtgaaatataggtgtcctaatagtgtttttagcagtgtgggacacatatacgactgtcaacagctcaaaaaatgtgttttggtgtttcgtgacctttAAATACTTAACGTTTTTTTAGAGTGTGCTAAAATGCCACTTTgtaaaacttttcaacatcagaagttaAGCAGAGATCAAGATCCAACTCTATGAgtcaaaagaagaaataaaagaaaGTATGTGAGCAAATGTGTGTATGTAAAAGGAGAGTGCACTAATGcatgtgtacagtatatgtgtgagcTGAGC
>TCONS_00027778
ATGGCCTTCAATACAACTCTTCACACCCACTCCCACATTGATGTATCAACCCACCATGAGAAATCAACACTGGACGTTGATGCCATTATGGAAAATATTACCATTGTCCTGTACACCATTACCATCATCTTCGGCATCAGCGGGAACTCTGTGGTCATCTGGGTGGCAGGTTTTCGTCTTAAACCCAACGTCAGCAACGTTTGGTTGGTCAACCTTGCAGTAGCAGATCTGATCTTCTGCTTCACCCGAATCATTTCACTCATTAAAAACCTCTTCTTTGACTACTGGCCTTTTGGACTCTTTCTCTGCAAGTTCAATGGTTTCTTCAAGTACGCCAACATGTTCTGCAGTGTTTTTCTTCTGGCTGTCATTAGTGTGGATCGAGCGCTCTGCGTCTGGTGTCCGGTGTTCACCAGGAAACGACGGACAATATGTGCTGCTCGTGTGGTCAGTGTGGGAGTTTGGATCGTGGCTGTGATCTTTAGTTCGCCCTACTTTGTTTACCGGCAGGTCTACCTTGGTGACAACAATTTGAGCAAGTGCTCTCTGGAGGTTAAAGAATCATCGAAGGGCGACAATTCGGCAAAGAACGCCCTGTACAGCATTCGCTTCTTGTGTGGATTCCTGTTGCCTTTCTTGGTCATCCTGTGCTGCTACGTTCTAGCTGCTATTGGGATACGCAGAGCAAGGTTTTCTGGCAAATCGAAGCCCCTGCGCATTCTCGCTGCACTCGTGGTCGCCTTTTTCCTGTGCTGGGCCCCATATCACTGCCTGCTGCTCGCCAAGATGGTGGACAAGAAAAGCCAAATAGTCAAAGTGGGCCTGCCTATTGCTAAGGGCACAGCGTATTTCAACAGTTGCGTCAACCCGCTGCTCTATTTCTGCATGGGACTCAATATTAGGCAAAACTTTAGGCAAAGCATATCAGGGATTTATCGGAGAGCGCTTATGGAAGAAGTCCCCACTGTACAGTCTCAGGAAGGCACGGGGGATGAAACacagtccctgatttatcaggaatCACCAGAGCTAAATGAACCAGTAACCCAGATCAAACGCTTCCCGTAA

Function

symbol description
si:ch73-160i9.3 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-252 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000076574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027776 False 1413 mRNA 0.46 3 10485847 10496308
TCONS_00027777 False 5879 mRNA 0.40 2 10493223 10500555
TCONS_00027778 True 1068 mRNA 0.48 3 10493607 10497681

Neighbor

gene id symbol gene type direction distance location
XLOC_013899 si:ch211-171h4.7 coding upstream 9823 10473612 ~ 10476024 (+)
XLOC_013898 necap1 coding upstream 77818 10396042 ~ 10408029 (+)
XLOC_013897 rcvrn3 coding upstream 133268 10339538 ~ 10352579 (+)
XLOC_013896 tmem238a coding upstream 152514 10331325 ~ 10333333 (+)
XLOC_013895 NA coding upstream 619125 9838182 ~ 9866722 (+)
XLOC_013901 si:ch73-160i9.1 coding downstream 7768 10508323 ~ 10509424 (+)
XLOC_013902 si:ch73-160i9.2 coding downstream 17893 10518448 ~ 10519589 (+)
XLOC_013903 si:ch73-160i9.3 coding downstream 26673 10527228 ~ 10528344 (+)
XLOC_013904 si:dkey-211g8.1 coding downstream 35538 10536093 ~ 10537982 (+)
XLOC_013905 usf2 coding downstream 57980 10558535 ~ 10577420 (+)
XLOC_013893 BX927218.1 non-coding upstream 728831 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1041969 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1055903 9429857 ~ 9429944 (+)
XLOC_013887 BX005154.1 non-coding upstream 1058431 9381450 ~ 9427416 (+)
XLOC_013906 CR384101.1 non-coding downstream 66816 10567371 ~ 10567486 (+)
XLOC_013918 CU628002.1 non-coding downstream 513067 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 777858 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1794895 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2444295 12944850 ~ 12944966 (+)

Expression


Co-expression Network