XLOC_013907 (si:dkey-211g8.4)


Basic Information

Item Value
gene id XLOC_013907
gene name si:dkey-211g8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10587307 ~ 10587858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027789
ACTGAGTTTCCATCAAATGTTGCTGTCGATCCACAATGACGACGTCCCAGAAACACAGACGATTCTGCTGTGAGCCGATGGGGGACAAACTCGTGTATGATCTTCCTGGAATAGGACCTGTGCTGGGTGGACGACTGCAGAACAAGGGTCTAATAAGAGCGCGGGATGTCCTGGGACGATTTCTAATTTTGAACAAGGATGAGTGGAAGTTTAAGAGCTGGCTAAGAGACTCGTGTGGAGCAAACGCAAAGCAGCAGAGAGACTGTTACAACTGTCTGAGAGAATGGACTAGCAATAATCTGTGAAGAGGTTTATCTAATAATTAATACTGCATGTTTCATCTTCCTGTTCACGTTCATTATACTGTTAACTAACATACCCTCATTATTTTATCTAGtattttactcatttttttattgttgttgattGCTTGATTCTGATTTTCTGATGAAAACTAGTTTTTTTATCAGGGTAAACCCAGtgataaagtagttccggaaagGTCTTGTATGGAGCTAGATTAGTCTCAAAAATAacgcatttacaaaataa

Function

symbol description
si:dkey-211g8.4 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be active in nucleoplasm.

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-624 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be active in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000094230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027789 True 552 mRNA 0.40 1 10587307 10587858

Neighbor

gene id symbol gene type direction distance location
XLOC_013905 usf2 coding upstream 9887 10558535 ~ 10577420 (+)
XLOC_013906 CR384101.1 coding upstream 19821 10567371 ~ 10567486 (+)
XLOC_013904 si:dkey-211g8.1 coding upstream 49325 10536093 ~ 10537982 (+)
XLOC_013903 si:ch73-160i9.3 coding upstream 58963 10527228 ~ 10528344 (+)
XLOC_013902 si:ch73-160i9.2 coding upstream 67718 10518448 ~ 10519589 (+)
XLOC_013908 si:dkey-211g8.5 coding downstream 4920 10592778 ~ 10598432 (+)
XLOC_013909 si:dkey-211g8.8 coding downstream 15547 10603405 ~ 10607376 (+)
XLOC_013910 ago3b coding downstream 73662 10661520 ~ 10686713 (+)
XLOC_013911 lipea coding downstream 206214 10794072 ~ 10826715 (+)
XLOC_013912 tomm40l coding downstream 243504 10831362 ~ 10845087 (+)
XLOC_013895 NA non-coding upstream 720585 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 830291 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1143429 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1157363 9429857 ~ 9429944 (+)
XLOC_013918 CU628002.1 non-coding downstream 425764 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 690555 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1707592 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2356992 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2527407 13115265 ~ 13115526 (+)

Expression


Co-expression Network