XLOC_013908 (si:dkey-211g8.5)


Basic Information

Item Value
gene id XLOC_013908
gene name si:dkey-211g8.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10592778 ~ 10598432 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027790
AAAGATTTCTTAAAGGCGGGGTTTCAGCGCTCATAATACAGAACAAGCGATGAACAGACACAGTAAACGACGATATTTTCCAAAGGCTGAAAAGATGCAACCTCGAAGAGGCAAGAAATCTTTCATCAGGGATGAAAGAAAGAGCAAGGCATGCCGGACCACTGAATCAGTCACACCATCAGGACTGCCAGaagaacaTTTGGATATGAACACTACTTATGAAATCCAGTGTTCGTCTAAGGATGGGCACAAGAGACGTAGAAGTGCAGAGAGCAAAGCAATGGGTTTGTTTTTCATTAGATTCTCATCTGTTTGAATGCTATATTTGCACTTTATGTGTTGTACTGTGTAAGAGTGGTTTCAAGGGTGGTTCCACATTGGCTCTCTAGAAATGGTGGTCTTAAATATCCAGATTAATTGAGATCAAAATTTGGGTTACTTCAATACAAcagtttattgtttttgttgcaaTACAATTAAagaataactatatatatatagttgtccACATTTAAGTGGATCGAACCATTTTATCAGCATTGTCCTTAACTAttcaacaacacccattcttcATTATGAGTCAATCATTATatatgtggaaatataaatttctatcatctaatttcaaattaacaataatctacatataactaaaaagttatattctttggtttttaattatataatttcattaacatcccagctaggagggacatttaacctttatctttctgattacaggctaagccaaagtaatgcaaattgtcagtttcacagcatggggtgtctattgttttctcttttcgatcaaatggtcaggcggtttctgtctccagaacatgatgagattagacctgagaagcagtttaccctg
>TCONS_00027791
TACAGAACAAGCGATGAACAGACACAGTAAACGACGATATTTTCCAAAGGCTGAAAAGATGCAACCTCGAAGAGGCAAGAAATCTTTCATCAGGGATGAAAGAAAGAGCAAGGCATGCCGGACCACTGAATCAGTCACACCATCAGGACTGCCAGGTAAAAATGTTCCCTTACAGGCTGCTCAATAAAAGCTACAATAGCTAAGAAGACATCTTAATAAAGCAGAAAAACATACACTGCTTATATTAAGcgtttttttaacagaagaacaTTTGGATATGAACACTACTTATGAAATCCAGTGTTCGTCTAAGGATGGGCACAAGAGACGTAGAAGTGCAGAGAGCAAAGCAATGGGTTTGTTTTTCATTAGATTCTCATCTGTTTGAATGCTATATTTGCACTTTATGTGTTGTACTGTGTAAGAGTGGTTTCAAGGGTGGTTCCACAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-718 No description available

Ensembl:

ensembl_id ENSDARG00000092259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027790 False 874 mRNA 0.36 4 10592778 10598432
TCONS_00027791 True 450 mRNA 0.39 3 10592814 10597936

Neighbor

gene id symbol gene type direction distance location
XLOC_013907 si:dkey-211g8.4 coding upstream 4920 10587307 ~ 10587858 (+)
XLOC_013905 usf2 coding upstream 15358 10558535 ~ 10577420 (+)
XLOC_013906 CR384101.1 coding upstream 25292 10567371 ~ 10567486 (+)
XLOC_013904 si:dkey-211g8.1 coding upstream 54796 10536093 ~ 10537982 (+)
XLOC_013903 si:ch73-160i9.3 coding upstream 64434 10527228 ~ 10528344 (+)
XLOC_013909 si:dkey-211g8.8 coding downstream 4973 10603405 ~ 10607376 (+)
XLOC_013910 ago3b coding downstream 63088 10661520 ~ 10686713 (+)
XLOC_013911 lipea coding downstream 195640 10794072 ~ 10826715 (+)
XLOC_013912 tomm40l coding downstream 232930 10831362 ~ 10845087 (+)
XLOC_013913 apoa4a coding downstream 247521 10845953 ~ 10850834 (+)
XLOC_013895 NA non-coding upstream 726056 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 835762 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1148900 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1162834 9429857 ~ 9429944 (+)
XLOC_013918 CU628002.1 non-coding downstream 415190 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 679981 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1697018 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2346418 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2516833 13115265 ~ 13115526 (+)

Expression


Co-expression Network