XLOC_013911 (lipea)


Basic Information

Item Value
gene id XLOC_013911
gene name lipea
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10794072 ~ 10826715 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027796
AGGCACGGAAGAGGATACACAAGCAAGCAAAAGCACAAGACATCCTCTGCCAAGTCGTGTTTAGTTGAGAATATGTACGAGTGTCGATAGCCCTCTGAAAAAACGCGCTGTTCGGTATGCTGTCAGCGATCCCTCGCAGTTCACGCGCATCTTACACGCGCGGCGGAGTTCAGTGAGTGACAGGTTGTCCGATATGGATCATAAGCATGTATTCGCAGGATTGCAGACGATTTGTTTGGATGTTATTTCGACTTTGAATGGATCCTCCAGTAATTCCTCAAATGCTGACGCCGCTGAGCGTCTGTTGGGGGTCATGAAGCAGATTCAGGAACACGGTCGCGCTGTTGAACCTTTGATCACTGGATTTATGACCGTCTATCATCATTTCGATTTGGATGAACAGACCCCAGGGAACGGATACCGGACACTAGTAAAGGTGGTTCATTCCTGTATCATCCACATTACCCATAAGGCCCGTTACATTGCATCAAACTGCACTGGAGCGTTTTTCCGTATGGACCATAATGTGGCAGAAATGGAAGCGTACTGTAGTGCCCTGTGCCAGCTGCGGGCATTACTTTACCTGGCACAGGTATTACTGAATGACAATCCCAACGGTCAGCTCTATTCACAAGAGGAAGGAGGTTTAAGCGAGAGATTTGTGCAAGAGTACATCTCCATGCACAAAGCCTGTTTCTATGGCCGCTGCTTGGGCTTC
>TCONS_00027797
CACAAGACATCCTCTGCCAAGTCGTGTTTAGTTGAGAATATGTACGAGTGTCGATAGCCCTCTGAAAAAACGCGCTGTTCGGTATGCTGTCAGCGATCCCTCGCAGTTCACGCGCATCTTACACGCGCGGCGGAGTTCAGTGAGTGACAGGTAAGCAAAGGTTGTCCGATATGGATCATAAGCATGTATTCGCAGGATTGCAGACGATTTGTTTGGATGTTATTTCGACTTTGAATGGATCCTCCAGTAATTCCTCAAATGCTGACGCCGCTGAGCGTCTGTTGGGGGTCATGAAGCAGATTCAGGAACACGGTCGCGCTGTTGAACCTTTGATCACTGGATTTATGACCGTCTATCATCATTTCGATTTGGATGAACAGACCCCAGGGAACGGATACCGGACACTAGTAAAGGTGGTTCATTCCTGTATCATCCACATTACCCATAAGGCCCGTTACATTGCATCAAACTGCACTGGAGCGTTTTTCCGTATGGACCATAATGTGGCAGAAATGGAAGCGTACTGTAGTGCCCTGTGCCAGCTGCGGGCATTACTTTACCTGGCACAGGTATTACTGAATGACAATCCCAACGGTCAGCTCTATTCACAAGAGGAAGGAGGTTTAAGCGAGAGATTTGTGCAAGAGTACATCTCCATGCACAAAGCCTGTTTCTATGGCCGCTGCTTGGGCTTCCAGttctctccctctctcaggCCTTTTTTACAGACTGTGGTCATCAGTATGGTGTCTTTTGGAGAAAACTACAAGAAACAGCAGACTGGTTTAGGCATCGCtgctctttctttttttacatcGGGCAAATATGTGGTGGACCCTGAACTGAGGGGGGCGGAGTTTGAGCGCATCACTCAAAATCTCGATATGCAGTTTTGGAAAACCTTTTGGAATATTACAGAGACTGAACTTTTATCAGGCTTGACAAGGATTACCTCTAGTGTGGTGCAGGTGAATGTAACACTAACTGTTCCAGCTGAGAGTCTGAGTTTGCCTCTGGCCTCTGACCCCAGTCTCTCAGTGGCTGTGAAGCCTCCGGTTGCACACTGGGGCCCTGGACCAGTCAATGTGCGCTTGATCTCGCACGTTCTCCGGCAAGGACAGGACAGTGCCGAACTGTTGTCACTTTCTCGTCCCGAGGGTCCTCAACTCTCCCTGTCAGGGGGTTTCAATCGTCAGACAGCTCCTCTTTCTCCATGCTTGCTCATACACTTCCATGGAGGAGGATTTGTTGCACAAACTTCAAAATCACATGAGAATTATTTAAAGAGCTGGTCTAAAGATCTGAATGTGCCCATCCTGTCGGTGGATTACTCTTTGGCTCCAGAGGCCCCGTTCCCCCGCGCTCTAGAAGAGTGTTTCTACGCCTACTGCTGGGCCTTGAAGAACTGCCACCTGCTGGGTTCGACAGCAGAGCATGTTTGTTTGGTGGGAGACAGTGCAGGCGGTAACCTGTGTATAACAGTATCTATGAGGGCCATGTCTCATGGTGTACGTGTTCCTGATGGGATTGTGGCAGCGTATCCAGCGACTTTACTAACAACAGACGCCTCACCATCTAGACTGCTCACTTTAATCGACCCTCTGCTGCCTTTAAGTGTGCTCTACAAGTGTATCGACGCCTATGCTGGTTTGAGCTGTCGGTCAGTACAGCCAGCTCAGCAGTTGGACACCCTGGCAGCTCTGGGACAGGACACCGTAAAGATGCTGAGTAAATTTGCCCAAGGAGCAACAAACTGGATTCAAACTTTGCTAGACCCAAAAGCACCACCGTCATCCTCATCAACAGCCTCTGCAACCACTTCATCAAACGGTCCTTCATCTTTTAAACCACATTCCGAGGAAGCACCGCAAGAAGTCAAAGAATACCCAGAAAACTTTGAGCCACTGCGGTCTAGTTGTCTGGTGGATATAAAGACGCCTTGCACACCGATTATGAAGAACCCATTTGTTTCTCCACTTCTTGCTCCAGACAGTCTTCTCAAGGGGCTTCCTCCAGTGCATATAGTGGCTTCCGCATTGGATGCCCTGTTAGATGATTCAGTGATGTTTGCCAAAAAGCTGAGGAATATGAACCAGCCAGTGACGCTCACTGTAGTGGAGGATCTTCCTCATGGATTCCTGAGCCTATTACAGCTCTCCAAAGAAACCCAGGAAGCAGCTGATATTTGTGTGAAACGAATCAGAGAAGTCTTGAAGCTGGAGGAACCAACAGATGATCAGAAGCAGTCAAGCGTTGTTTAGACAGTTTTATGCTTGGGAAAGTCAAGCAAAGTCCAAGGAATAGTGGACTTAAAGAAGTCGAAATAACTTCGACAGGTTCAAAAGcagataattatttaaaataatgacagGGATCCTGGAAGCACTTTATAGTTTTTAGTGTGACTGGCACAGAGACTTGGAAAGCAATACATCTGTAGAACTTCTGTCAGGTTTACATTTCTTTCAAGGCACAAGTATTTAGATCATCtcgcaaacaaaaaaaa
>TCONS_00027798
ATGGATCATAAGCATGTATTCGCAGGATTGCAGACGATTTGTTTGGATGTTATTTCGACTTTGAATGGATCCTCCAGTAATTCCTCAAATGCTGACGCCGCTGAGCGTCTGTTGGGGGTCATGAAGCAGATTCAGGAACACGGTCGCGCTGTTGAACCTTTGATCACTGGATTTATGACCGTCTATCATCATTTCGATTTGGATGAACAGACCCCAGGGAACGGATACCGGACACTAGTAAAGGTGGTTCATTCCTGTATCATCCACATTACCCATAAGGCCCGTTACATTGCATCAAACTGCACTGGAGCGTTTTTCCGTATGGACCATAATGTGGCAGAAATGGAAGCGTACTGTAGTGCCCTGTGCCAGCTGCGGGCATTACTTTACCTGGCACAGGTATTACTGAATGACAATCCCAACGGTCAGCTCTATTCACAAGAGGAAGGAGGTTTAAGCGAGAGATTTGTGCAAGAGTACATCTCCATGCACAAAGCCTGTTTCTATGGCCGCTGCTTGGGCTTCCAGttctctccctctctcaggCCTTTTTTACAGACTGTGGTCATCAGTATGGTGTCTTTTGGAGAAAACTACAAGAAACAGCAGACTGGTTTAGGCATCGCtgctctttctttttttacatcGGGCAAATATGTGGTGGACCCTGAACTGAGGGGGGCGGAGTTTGAGCGCATCACTCAAAATCTCGATATGCAGTTTTGGAAAACCTTTTGGAATATTACAGAGACTGAACTTTTATCAGGCTTGACAAGGATTACCTCTAGTGTGGTGCAGGTGAATGTAACACTAACTGTTCCAGCTGAGAGTCTGAGTTTGCCTCTGGCCTCTGACCCCAGTCTCTCAGTGGCTGTGAAGCCTCCGGTTGCACACTGGGGCCCTGGACCAGTCAATGTGCGCTTGATCTCGCACGTTCTCCGGCAAGGACAGGACAGTGCCGAACTGTTGTCACTTTCTCGTCCCGAGGGTCCTCAACTCTCCCTGTCAGGGGGTTTCAATCGTCAGACAGCTCCTCTTTCTCCATGCTTGCTCATACACTTCCATGGAGGAGGATTTGTTGCACAAACTTCAAAATCACATGAGAATTATTTAAAGAGCTGGTCTAAAGATCTGAATGTGCCCATCCTGTCGGTGGATTACTCTTTGGCTCCAGAGGCCCCGTTCCCCCGCGCTCTAGAAGAGTGTTTCTACGCCTACTGCTGGGCCTTGAAGAACTGCCACCTGCTGGGTTCGACAGCAGAGCATGTTTGTTTGGTGGGAGACAGTGCAGGCGGTAACCTGTGTATAACAGTATCTATGAGGGCCATGTCTCATGGTGTACGTGTTCCTGATGGGATTGTGGCAGCGTATCCAGCGACTTTACTAACAACAGACGCCTCACCATCTAGACTGCTCACTTTAATCGACCCTCTGCTGCCTTTAAGTGTGCTCTACAAGTGTATCGACGCCTATGCTGGTTTGAGCTGTCGGTCAGTACAGCCAGCTCAGCAGTTGGACACCCTGGCAGCTCTGGGACAGGACACCGTAAAGATGCTGAGTAAATTTGCCCAAGGAGCAACAAACTGGATTCAAACTTTGCTAGACCCAAAAGCACCACCGTCATCCTCATCAACAGCCTCTGCAACCACTTCATCAAACGGTCCTTCATCTTTTAAACCACATTCCGAGGAAGCACCGCAAGAAGTCAAAGAATACCCAGAAAACTTTGAGCCACTGCGGTCTAGTTGTCTGGTGGATATAAAGACGCCTTGCACACCGATTATGAAGAACCCATTTGTTTCTCCACTTCTTGCTCCAGACAGTCTTCTCAAGGGGCTTCCTCCAGTGCATATAGTGGCTTCCGCATTGGATGCCCTGTTAGATGATTCAGTGATGTTTGCCAAAAAGCTGAGGAATATGAACCAGCCAGTGACGCTCACTGTAGTGGAGGATCTTCCTCATGGATTCCTGAGCCTATTACAGCTCTCCAAAGAAACCCAGGAAGCAGCTGATATTTGTGTGAAACGAATCAGAGAAGTCTTGAAGCTGGAGGAACCAACAGATGATCAGAAGCAGTCAAGCGTTGTTTAG

Function

symbol description
lipea Predicted to enable hormone-sensitive lipase activity and lipase activity. Predicted to be involved in triglyceride catabolic process. Predicted to act upstream of or within cholesterol metabolic process and lipid catabolic process. Predicted to be located in caveola; cytosol; and lipid droplet. Is expressed in male organism. Human ortholog(s) of this gene implicated in arteriosclerosis; familial partial lipodystrophy type 6; and hypertension. Orthologous to human LIPE (lipase E, hormone sensitive type).

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-734 Predicted to enable hormone-sensitive lipase activity and lipase activity. Predicted to be involved in triglyceride catabolic process. Predicted to act upstream of or within cholesterol metabolic process and lipid catabolic process. Predicted to be located in caveola; cytosol; and lipid droplet. Is expressed in male organism. Human ortholog(s) of this gene implicated in arteriosclerosis; familial partial lipodystrophy type 6; and hypertension. Orthologous to human LIPE (lipase E, hormone sensitive type).

Ensembl:

ensembl_id ENSDARG00000063037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027796 False 718 mRNA 0.48 3 10794072 10813799
TCONS_00027797 False 2506 mRNA 0.47 11 10794105 10826715
TCONS_00027798 True 2091 mRNA 0.48 10 10799929 10826470

Neighbor

gene id symbol gene type direction distance location
XLOC_013910 ago3b coding upstream 107359 10661520 ~ 10686713 (+)
XLOC_013909 si:dkey-211g8.8 coding upstream 186696 10603405 ~ 10607376 (+)
XLOC_013908 si:dkey-211g8.5 coding upstream 195640 10592778 ~ 10598432 (+)
XLOC_013907 si:dkey-211g8.4 coding upstream 206214 10587307 ~ 10587858 (+)
XLOC_013905 usf2 coding upstream 216652 10558535 ~ 10577420 (+)
XLOC_013912 tomm40l coding downstream 4647 10831362 ~ 10845087 (+)
XLOC_013913 apoa4a coding downstream 19238 10845953 ~ 10850834 (+)
XLOC_013914 apoea coding downstream 28443 10855158 ~ 10859694 (+)
XLOC_013915 si:ch73-347e22.4 coding downstream 33770 10860485 ~ 10872469 (+)
XLOC_013916 si:ch73-347e22.8 coding downstream 111217 10937932 ~ 10950839 (+)
XLOC_013906 CR384101.1 non-coding upstream 226586 10567371 ~ 10567486 (+)
XLOC_013895 NA non-coding upstream 927350 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 1037056 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1350194 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1364128 9429857 ~ 9429944 (+)
XLOC_013918 CU628002.1 non-coding downstream 186907 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 451698 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1468735 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2118135 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2288550 13115265 ~ 13115526 (+)

Expression


Co-expression Network