XLOC_013912 (tomm40l)


Basic Information

Item Value
gene id XLOC_013912
gene name tomm40l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10831362 ~ 10845087 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027799
CTGATTCAAAAACTCGCTAAGTAGttcttttcaaaattaaaaagtaaaacttaCATTATATAATGTAAAGATGCTGAAAGATTCACAACGGCCCGGTTCCATTCATTCCGACTCGTAAATGAATAGTTCAGACTGGTTTAATGAACGCATTTGCTGAAAGGATTCGACTCTGAATGATTCATTTCTTTCACAATACATCGATGGACACACGTGGTTCTGTAACCAGGAGACCCGTCCTCTGAGAAGCTCAACAATGGGCAGTGTGTTGGCTGCCAGCGCCCCCAGCCCACCTCCACCAGGGCCGGGTGCCCCAGGTTTGGTATCGGTGCCTCCGGGATTTACGATGCCCCCCGTCTCACCGGTCTCTGCCCCGAGCAGCTCTCCAACCGGGCAACAGGACACCGAGCCTCCCCTTCCAAACCCCGGAGGATTTGAAGAGTGCCATCGCAAATgcaaagAGGTTTTTCCAGTGCAGATGGAGGGTGTCAGACTAACAGTGAACAAGGGCTTGAGCAATCACTTCCAGGTGAACCACACGGTGTTGTTAAGCACTCAAGCAGATTCCAGCTACAGATTTGGAGCGACGTATGTGGGAACCAAACAAACAGGACCAGGAGAGGCCTTTCCCGTCATGGTTGGTGATATGGACAACACAGGGAGCTTAAATGCACAGGTTATTCATCAGATCACTGACAAAGTACGCTCTAAATTCGTCTTCCAGACTCAGCAGCAGAAATTTGTGAACTGGCAAGGAGACACTGAATTTAAAGGAGAGGATTTCActgctgctgtgacatttggaaaCCCAGATGTGTTGATGGGATCAGGAATTGTTGTAGCTCATTATCTCCAGTCTGTGACTTCATCGCTGGCATTAGGAGGAGAGCTGGTGTACCATCGACGGCCAGGAGAGGAGGGCACAGTCATGTCTCTGGCTGGCAGATATACAGGCAGCAACTTCATCGCCACATTGACACTAGGAGGAGCTGGAGTTCATGCCTCTTACTACCACAAAGCCAACGATCAGtTGCAGGTTGGAGTGGAGTATGAAGTGAGCACTCGCATGCAGGACACTAGTGTAACATTTGGGTACCAGCTGGATGTCCCTAAAGCCAACCTGGTTTTTAAAGGTTCTTTAGACAGTAACTGGGTGGTTGGAGCCAATCTGGAGAAGAAGCTTCAGCCTCTGCCTCTGTCACTGGCCCTCAGCGCTTACCTGGACCACAGAAAACACAAGTTCCAGTGTGGCTTTGGCATCACCATTGGTTAAACCTGCCTTCATTTTTTGCTTAATTCTACAGTTTACACGCACACACCAGATGCTGGTGAAGGTTGCTGGTCAAACAAGTCAAACACACTTAAACAAAATCAGTAACTATGAAGCAAAAGAAAGCATTGATTGCTAATTTATTGCATCAAAGCAACCTCAGGCTTTCCATTTCATTTCTCTTGTaatatgaacaaaaaacaatgatcattataatatgcaaaaaaaatgtcataaataCATCATACATGATCATATATGAGAACCGAAAAGAAATCCAACAAAACGAGAAACAGATTTATATGTGTGTCTTGTATGTGTTAGTTGTCAGTTCTTTTTatataagttattttattttgcctTTAATAAGGAGATTGAGGGTTATTTTACTTCcagtcaatgatttttttttttcgtcagaattatttttttaaataagttctGGATCTCTGTACTTGTATAGGTACATACATGGATACAATATTGTATGCATTGCCTGTATTGAAAATTGtggataaattattattaaaacaaaacattata
>TCONS_00027800
AATGGGCAGTGTGTTGGCTGCCAGCGCCCCCAGCCCACCTCCACCAGGGCCGGGTGCCCCAGGTTTGGTATCGGTGCCTCCGGGATTTACGATGCCCCCCGTCTCACCGGTCTCTGCCCCGAGCAGCTCTCCAACCGGGCAACAGGACACCGAGCCTCCCCTTCCAAACCCCGGAGGATTTGAAGAGTGCCATCGCAAATgcaaagAGGTTTTTCCAGTGCAGATGGAGGGTGTCAGACTAACAGTGAACAAGGGCTTGAGCAATCACTTCCAGGTGAACCACACGGTGTTGTTAAGCACTCAAGCAGATTCCAGCTACAGATTTGGAGCGACGTATGTGGGAACCAAACAAACAGGACCAGGAGAGGCCTTTCCCGTCATGGTTGGTGATATGGACAACACAGGGAGCTTAAATGCACAGGTTATTCATCAGATCACTGACAAAGTACGCTCTAAATTCGTCTTCCAGACTCAGCAGCAGAAATTTGTGAACTGGCAAGGAGACACTGAATTTAAAGGAGAGGATTTCActgctgctgtgacatttggaaaCCCAGATGTGTTGATGGGATCAGagtgtgaagggaaagggcttTGAAATTTACCACTGAGAAATGGGACAGctctacagcacctgcacacatcatcctatgtcatcgcaatcttttgcttcatatgagatcgatgatggcgactgctgttgttattccagttgcattatttttgggtatttatcttcaggaaaccattgaaggcatatatcatgttatcataaagaCATAATATGGCAATAAGGTAATAATGTGTCTGGGGCTTTGGGGCATGACATTTCGAAACCCCCCAAATTTTCTCCACTTGCCTATGTCATTTTTTACccacacaatcaaattcaaaaccgcccaatctggcaacactgaca
>TCONS_00027801
AATGGGCAGTGTGTTGGCTGCCAGCGCCCCCAGCCCACCTCCACCAGGGCCGGGTGCCCCAGGTTTGGTATCGGTGCCTCCGGGATTTACGATGCCCCCCGTCTCACCGGTCTCTGCCCCGAGCAGCTCTCCAACCGGGCAACAGGACACCGAGCCTCCCCTTCCAAACCCCGGAGGATTTGAAGAGTGCCATCGCAAATgcaaagAGGTTTTTCCAGTGCAGATGGAGGGTGTCAGACTAACAGTGAACAAGGGCTTGAGCAATCACTTCCAGGTGAACCACACGGTGTTGTTAAGCACTCAAGCAGATTCCAGCTACAGATTTGGAGCGACGTATGTGGGAACCAAACAAACAGGACCAGGAGAGGCCTTTCCCGTCATGGTTGGTGATATGGACAACACAGGGAGCTTAAATGCACAGGTTATTCATCAGATCACTGACAAAGTACGCTCTAAATTCGTCTTCCAGACTCAGCAGCAGAAATTTGTGAACTGGCAAGGAGACACTGAATTTAAAGGAGAGGATTTCActgctgctgtgacatttggaaaCCCAGATGTGTTGATGGGATCAGGAATTGTTGTAGCTCATTATCTCCAGTCTGTGACTTCATCGCTGGCATTAGGAGGAGAGCTGGTGTACCATCGACGGCCAGGAGAGGAGGGCACAGTCATGTCTCTGGCTGGCAGATATACAGGCAGCAACTTCATCGCCACATTGACACTAGGAGGAGCTGGAGTTCATGCCTCTTACTACCACAAAGCCAACGATCAGtTGCAGGTTGGAGTGGAGTATGAAGTGAGCACTCGCATGCAGGACACTAGTGTAACATTTGGGTACCAGCTGGATGTCCCTAAAGCCAACCTGGTTTTTAAAGGTTCTTTAGACAGTAACTGGGTGGTTGGAGCCAATCTGGAGAAGAAGCTTCAGCCTCTGCCTCTGTCACTGGCCCTCAGCGCTTACCTGGACCACAGAAAACACAAGTTCCAGTGTGGCTTTGGCATCACCATTGGTTAAACCTGCCTTCATTTTTTGCTTAATTCTACAGTTTACACGCACACACCAGATGCTGGTGAAGGTTGCTGGTCAAACAAGTCAAACACACTTAAACAAAATCAGTAACTATGAAGCAAAAGAAAGCATTGATTGCTAATTTATTGCATCAAAGCAACCTCAGGCTTTCCATTTCATTTCTCTTGTaatatgaacaaaaaacaatgatcattataatatgcaaaaaaaatgtcataaataCATCATACATGATCATATATGAGAACCGAAAAGAAATCCAACAAAACGAGAAACAGATTTATATGTGTGTCTTGTATGTGTTAGTTGTCAGTTCTTTTTatataagttattttattttgcctTTAATAAGGAGATTGAGGGTTATTTTACTTCcagtcaatgatttttttttttcgtcagaattatttttttaaataagttctGGATCTCTGTACTTGTATAGGTACATACATGGATACAATATTGTATGCATTGCCTGTATTGAAAATTGtggataaattattattaaaacaaaacattatacaTCTGTTTATCTATTAAACTGAGTTGCTGAGATTGTCTATGCATAACGCCATAATCTGTTAAGTTAACAACTGATTATATATACTAATTAGACATGAATAATAATGTTGTGCTTGATATAAAGTCATATTGCTAATATAACTTTGACTGAACCAtcctaattattttatataacagaATGTCttttatgttattataattttataaataattttaaactggtcttaattttaaaagacacccatccaatcaccaaaAATCCATCTAaacaactttttttatatatataaattattttaaaaagtttttattgcAAAGATTTACACTTCACAACACCTGTTAAGACATTTTTACGGCAAATTCTCTTAATTAAATTCCCCGATAAggaaaagaaaactgaaaacaattacacaattcctcatgataataacagcaaTATATTCCTGTACATGATCTTCCATTTACAAAAACACTATCTGCAGAAGTAAGAGTGAGTAGACATGATCTTTATAAGTAGGCATATTAGGCAtaaggttttataacagaaacacattaggTTGAATAAGAGTTAAACTCTATTAATTTGGACAAAAAGCgaacaaatatatttgtaattttcttcattataaatatactttcGACAATGCTAAACTtgtcattaaaaagaaaaataaacatgctgaAAAAAAGTGTATACAACTAGATACATTAAGATATGAGGTTAAGAAATAActgcattagatttttttttccaattcttTTGGCTCAACCTGGCtatcacaaaaaaatattagTGTTTAGCCCAGAATGTCTGaagtttcattcataatggtcttaaaaaatcttaaatggacttgatgaaacctgcagaaatgctaatacattttttacatggTCACAGGCACTCTAATTAATGAAACCATAAGTTAATTAATAAGTTTTGACCACTCTTAATGTTATCAgagaatttatttaaaactttttttttacaatatttagaagcttttcaaaatatttatgattCACAAGTTACACTAGTGTTTAAAACTGTCTTTTTTGAAGGACGCAGGGTTCCCACTATTTCATAAAAAAcagattcaaggactttttaaagcaccGTTAATTTCAAATCAAGCGCCGCTTTAATTCACTTACATTTAATATTCACATTCAAATGTCAGAGCATGTCATTGTTAAACATTTAGACTGTTTTAACTAGTCATGTACAAAGAACTTTAATCTGTTGAGATTAATACTGGTAATAATTAAATGCAGTTTCTGATAAAATTTGCATTATTCATCTTTgtacaaaattaacatttttaaaaaccttttttaaaaatttctttgTTCTCTTTTTGGCAGAAGCACAATACAGTTGTTGAAATAACACAAAGAAATATAAAATCAGATTTAATTTAAGCATTTTCAatggcctgttttttttttttccaggccaTAAATCcagggctgcgtctgaaatcacacactttcatactatatagtacgctaaaaacagtatatgagccaagtagtatgtctgaattcattgAAATTCGAAAAAcggtatgtgagaagtacccggatgggctactacttctggcgagattctgaagtgtgcattccatgcacgctgcgctatcccatgatgccctgcgagagaatttatgaatgggagtaaagcgatgcAACTAAAGAAGGtgggtcacgtgatcatgacaaaatgatgGACATAGTACTGTACgtctgagttccattcatactgtatggAGCATACTTTGGTTACTTTTACTTTGGTACTAAACCATTAAACTCTAATGGTTTAGTAAATTTAAATTCTAATGCAGTAGTAGGCTGTTTCAGATGCAGCATACTGTATGTCTGAGATTCAAGTACTGTGGGAGTACTTGGCAAGTAATGCCACGGTCACACTGGAGTTTGAGTATGCGATATTCTGTTGTAtggtgctgtgaaaaggggcgaaattaaacaatatgattagacatttaaaaaaaaaaaagcaagtggttgctccatatttaaaaattttgtacagagatgtcatgttttgatcttcgattggtctcatgcagttaCGTGATGCGATTTGCAAGtttagagttcaccaagcttaaacttcgAACTGCCAACATTTTTTGCATGAGTTTGCATTTCTGGTCTGTCGCATTTGCATAGATGTgcatggaagtctatggggcaaaaagtccagtgtgaccatgGGTTAAAGTCCCCATAAACCGGAAACTGTGAccaatttttttgtattgtgacgcagttcctagggaaatgaaatattaaatgggaaaacagtgggcgtggcttgttttttctactgcgagcagaatggatgtagtaaagaaggcatttcatttagaaagatcTGGAAAAAGGGTTGAGGAGAGAGTAATTGCAACCAACAACCTTCTCTTGCTcgctatttctgtttgttgtcaaaaccaACAGTTGGAGGGGCGTTGTTGAATATATTAGCCACGGCCATTTGCTAAGATATACGTAATTGACAATTTGcaaaagtgcattttcagatttcatttacaataatacaatacaagggcaaacatttttttttcttaatgacatttgatttgttcaccacaaaactaaaaCTGTtggctaacaaaatcatatggttagttttaatTTCTTGAAGACTTTAAGTGTGGGAACCCTTTGGAGGGTTAAAATAATCATAGACACTATTTTTAAACCACCTTGAGCAACATCAGTTTCTTTCACCTTTTGACCTAATCTATTtttgcaaacctttttttttttttttttcaaaacaagatTATGTCCCAAACACACTCCATTCCCACTTCTTTGTGACTGGGCGTTTAGCCGATATCAGGCTGTTTTAACTGCAGATAATTGTTGTAAAGAAGAGGTCAATGTCCAGAAGGATCCTCCTTAATACCTGACTCATCAGTCCATCGACTTTACATAAATACGTGCAGATCAACATGTGTAAATGCTAATGCACCTCTGCACCTAATAGATATCATTTTACATAACTGCATGGATAAAGTGGGAGATTACCAAGTCattgttttattgaaaataaacatttaatattacaaataattaagAATTAAATACAAAGTGCTCTCTTTAAGACCAATAGTTGTCA

Function

symbol description
tomm40l Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Is expressed in several structures, including head; immature eye; liver; midbrain; and pectoral fin bud. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40).

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0055085 transmembrane transport biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008320 protein transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2319 Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Is expressed in several structures, including head; immature eye; liver; midbrain; and pectoral fin bud. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40).

Ensembl:

ensembl_id ENSDARG00000036721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027799 False 1810 mRNA 0.43 10 10831362 10841915
TCONS_00027800 False 919 processed_transcript 0.48 6 10832092 10835621
TCONS_00027801 True 4730 mRNA 0.36 9 10832092 10845087

Neighbor

gene id symbol gene type direction distance location
XLOC_013911 lipea coding upstream 4647 10794072 ~ 10826715 (+)
XLOC_013910 ago3b coding upstream 144649 10661520 ~ 10686713 (+)
XLOC_013909 si:dkey-211g8.8 coding upstream 223986 10603405 ~ 10607376 (+)
XLOC_013908 si:dkey-211g8.5 coding upstream 232930 10592778 ~ 10598432 (+)
XLOC_013907 si:dkey-211g8.4 coding upstream 243504 10587307 ~ 10587858 (+)
XLOC_013913 apoa4a coding downstream 866 10845953 ~ 10850834 (+)
XLOC_013914 apoea coding downstream 10071 10855158 ~ 10859694 (+)
XLOC_013915 si:ch73-347e22.4 coding downstream 15398 10860485 ~ 10872469 (+)
XLOC_013916 si:ch73-347e22.8 coding downstream 92845 10937932 ~ 10950839 (+)
XLOC_013917 si:ch1073-70f20.1 coding downstream 134896 10979983 ~ 10986661 (+)
XLOC_013906 CR384101.1 non-coding upstream 263876 10567371 ~ 10567486 (+)
XLOC_013895 NA non-coding upstream 964640 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 1074346 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1387484 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1401418 9429857 ~ 9429944 (+)
XLOC_013918 CU628002.1 non-coding downstream 168535 11013622 ~ 11014858 (+)
XLOC_013922 CU928061.1 non-coding downstream 433326 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1450363 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2099763 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2270178 13115265 ~ 13115526 (+)

Expression


Co-expression Network