XLOC_013913 (apoa4a)


Basic Information

Item Value
gene id XLOC_013913
gene name apoa4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10845953 ~ 10850834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027802
ACAGATGATTTCATGAACGAGTCACACGGCATGTAGAAATGACAGCAGGGCAAAACTTTCTGGACTTTACTGCCTTTATCAGAGTTTTGTCGTCCATTTATATACAACGCAGATACCCTCGCACTTACACACAGAAGAGGACAAGAGAAGaaCCAGCAAATAACCATGAAAGTCCTTGTAGTATTCGTCATCGCAGCTTTCTCTAGCTGTCATGCCAACATGATGTGGCAGGACCAACCAATGCCCAGCATGGACCTGGTGAAAAATGCTTTCTGGAATTACGTTTCTCAAGCGACCCTCACAGCTGAGGAAACACTTCAGATGATCAGAAACTCAGAGCTGGGTCAAGAAATCAATGACAGGATCTCTAAAAGCACAGATGCCATCAATAAATACACCCTGGCCATTCAAAGTCAGGTCACTCCTTTGACCCAAGAACTGCTCACCAAACTGTCCCAGGAGGCCGATCAGCTGAAACTGAGTCTGGAGCAAGAAATCACCTCGGCACAGACCCAGCTCAAGCCTTATGTTGAAGAACTCAAAGTGGACATTGAGGAGCAGATTGAGCGGCTGAAAAAGGACGTGGCTCCATACGCAGAGGCCCTGAACCCTGAAGCCATGAGGTTGACCCTGGTCCTGCGGGCTGAAGAGCTGAAGGCAAAGCTGGAAACAAGTTTGATGGCGATGGGTCCTCAGAGCGAGGAGCTGAAGCAGAAGCTGGAGCAGCACTTTGTGGAGTTTCAGATGAGCATGTCTCCACTGGCTGAGAGTTTTCAGAGTCAGCTGGCCCAGAGAAGTCAGGAGCTCCAGAAGAATCTGGCTCCCTATTCTGAAGAGCTGAGCAAACTAGATCCGCTCGCTCAGGATCTGAAGGACCAGCTGACTGCCCTCTGGGAGTCCTTCGCCAAGGATAAACAGTCGTGAAAGACTCTAGAGACTTTTAGATATGcgtaatttatgttatttttggatttaatatatatttttgtcattcatgcatgtttttaccaaaaaattgtgaaataaaaaaacagtaagcACT
>TCONS_00027803
agaaCCAGCAAATAACCATGAAAGTCCTTGTAGTATTCGTCATCGCAGCTTTCTCTAGCTGTCATGCCAACATGATGTGGCAGGACCAACCAATGCCCAGCATGGACCTGGTGAAAAATGCTTTCTGGAATTACGTTTCTCAAGCGACCCTCACAGCTGAGGAAACACTTCAGATGATCAGAAACTCAGAGCTGGGTCAAGAAATCAATGACAGGATCTCTAAAAGCACAGATGCCATCAATAAATACACCCTGGCCATTCAAAGTCAGGTCACTCCTTTGACCCAAGAACTGCTCACCAAACTGTCCCAGGAGGCCGATCAGCTGAAACTGAGTCTGGAGCAAGAAATCACCTCGGCACAGACCCAGCTCAAGCCTTATGTTGAAGAACTCAAAGTGGACATTGAGGAGCAGATTGAGCGGCTGAAAAAGGACGTGGCTCCATACGCAGAGGCCCTGAACCCTGAAGCCATGAGGTTGACCCTGGTCCTGCGGGCTGAAGAGCTGAAGGCAAAGCTGGAAACAAGTTTGATGGCGATGGGTCCTCAGAGCGAGGAGCTGAAGCAGAAGCTGGAGCAGCACTTTGTGGAGTTTCAGATGAGCATGTCTCCACTGGCTGAGAGTTTTCAGAGTCAGCTGGCCCAGAGAAGTCAGGAGCTCCAGAAGAATCTGGCTCCCTATTCTGAAGAGCTGAGCAAACTAGATCCGCTCGCTCAGGATCTGAAGGACCAGCTGACTGCCCTCTGGGAGTCCTTCGCCAAGGATAAACAGTCGTGAAAGACTCTAGAGACTTTTAGATATGcgtaatttatgttatttttggatttaatatatatttttgtcattcatgcatgtttttaccaaaaaattgtgaaataaaaaaacagtaagcACT
>TCONS_00027804
AACATGATGTGGCAGGACCAACCAATGCCCAGCATGGACCTGGTGAAAAATGCTTTCTGGAATTACGTTTCTCAAGCGACCCTCACAGCTGAGGAAACACTTCAGATGATCAGAAACTCAGAGCTGGGTCAAGAAATCAATGACAGGATCTCTAAAAGCACAGATGCCATCAATAAATACACCCTGGCCATTCAAAGTCAGGTCACTCCTTTGACCCAAGAACTGCTCACCAAACTGTCCCAGGAGGCCGATCAGCTGAAACTGAGTCTGGAGCAAGAAATCACCTCGGCACAGACCCAGCTCAAGCCTTATGTTGAAGAACTCAAAGTGGACATTGAGGAGCAGATTGAGCGGCTGAAAAAGGACGTGGCTCCATACGCAGAGGCCCTGAACCCTGAAGCCATGAGGTTGACCCTGGTCCTGCGGGCTGAAGAGCTGAAGGCAAAGCTGGAAACAAGTTTGATGGCGATGGGTCCTCAGAGCGAGGAGCTGAAGCAGAAGCTGGAGCAGCACTTTGTGGAGTTTCAGATGAGCATGTCTCCACTGGCTGAGAGTTTTCAGAGTCAGCTGGCCCAGAGAAGTCAGGAGCTCCAGAAGAATCTGGCTCCCTATTCTGAAGAGCTGAGCAAACTAGATCCGCTCGCTCAGGATCTGAAGGACCAGCTGACTGCCCTCTGGGAGTCCTTCGCCAAGGATAAACAGTCGTGA

Function

symbol description
apoa4a Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-469 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDARG00000101160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027802 False 1042 mRNA 0.46 4 10845953 10850834
TCONS_00027803 False 894 mRNA 0.47 3 10846182 10850834
TCONS_00027804 True 708 mRNA 0.51 2 10847118 10850716

Neighbor

gene id symbol gene type direction distance location
XLOC_013912 tomm40l coding upstream 866 10831362 ~ 10845087 (+)
XLOC_013911 lipea coding upstream 19238 10794072 ~ 10826715 (+)
XLOC_013910 ago3b coding upstream 159240 10661520 ~ 10686713 (+)
XLOC_013909 si:dkey-211g8.8 coding upstream 238577 10603405 ~ 10607376 (+)
XLOC_013908 si:dkey-211g8.5 coding upstream 247521 10592778 ~ 10598432 (+)
XLOC_013914 apoea coding downstream 4324 10855158 ~ 10859694 (+)
XLOC_013915 si:ch73-347e22.4 coding downstream 9651 10860485 ~ 10872469 (+)
XLOC_013916 si:ch73-347e22.8 coding downstream 87098 10937932 ~ 10950839 (+)
XLOC_013917 si:ch1073-70f20.1 coding downstream 129149 10979983 ~ 10986661 (+)
XLOC_013918 CU628002.1 coding downstream 162788 11013622 ~ 11014858 (+)
XLOC_013906 CR384101.1 non-coding upstream 278467 10567371 ~ 10567486 (+)
XLOC_013895 NA non-coding upstream 979231 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 1088937 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1402075 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1416009 9429857 ~ 9429944 (+)
XLOC_013922 CU928061.1 non-coding downstream 427579 11278413 ~ 11278529 (+)
XLOC_013928 NA non-coding downstream 1444616 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 2094016 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2264431 13115265 ~ 13115526 (+)

Expression


Co-expression Network