Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_013914 |
| gene name | apoea |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 10855158 ~ 10859694 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| apoea | Predicted to enable lipid binding activity. Predicted to be involved in several processes, including cholesterol catabolic process; lipoprotein catabolic process; and positive regulation of nitric-oxide synthase activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Predicted to be part of intermediate-density lipoprotein particle. Is expressed in brain; female organism; male organism; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease (multiple); artery disease (multiple); biliary tract cancer (multiple); eye disease (multiple); and familial hyperlipidemia (multiple). Orthologous to human APOE (apolipoprotein E). |
| id | name | namespace |
|---|---|---|
| GO:1900221 | regulation of amyloid-beta clearance | biological_process |
| GO:0042157 | lipoprotein metabolic process | biological_process |
| GO:0042159 | lipoprotein catabolic process | biological_process |
| GO:0006707 | cholesterol catabolic process | biological_process |
| GO:0051000 | positive regulation of nitric-oxide synthase activity | biological_process |
| GO:0043524 | negative regulation of neuron apoptotic process | biological_process |
| GO:0006869 | lipid transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0034363 | intermediate-density lipoprotein particle | cellular_component |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-010724-18 | Predicted to enable lipid binding activity. Predicted to be involved in several processes, including cholesterol catabolic process; lipoprotein catabolic process; and positive regulation of nitric-oxide synthase activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Predicted to be part of intermediate-density lipoprotein particle. Is expressed in brain; female organism; male organism; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease (multiple); artery disease (multiple); biliary tract cancer (multiple); eye disease (multiple); and familial hyperlipidemia (multiple). Orthologous to human APOE (apolipoprotein E). |
| ensembl_id | ENSDARG00000102004 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00027805 | False | 1065 | mRNA | 0.47 | 4 | 10855158 | 10859694 |
| TCONS_00027806 | True | 781 | mRNA | 0.40 | 2 | 10855291 | 10856175 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_013913 | apoa4a | coding | upstream | 4324 | 10845953 ~ 10850834 (+) |
| XLOC_013912 | tomm40l | coding | upstream | 10071 | 10831362 ~ 10845087 (+) |
| XLOC_013911 | lipea | coding | upstream | 28443 | 10794072 ~ 10826715 (+) |
| XLOC_013910 | ago3b | coding | upstream | 168445 | 10661520 ~ 10686713 (+) |
| XLOC_013909 | si:dkey-211g8.8 | coding | upstream | 247782 | 10603405 ~ 10607376 (+) |
| XLOC_013915 | si:ch73-347e22.4 | coding | downstream | 791 | 10860485 ~ 10872469 (+) |
| XLOC_013916 | si:ch73-347e22.8 | coding | downstream | 78238 | 10937932 ~ 10950839 (+) |
| XLOC_013917 | si:ch1073-70f20.1 | coding | downstream | 120289 | 10979983 ~ 10986661 (+) |
| XLOC_013918 | CU628002.1 | coding | downstream | 153928 | 11013622 ~ 11014858 (+) |
| XLOC_013919 | si:ch73-109i22.2 | coding | downstream | 354313 | 11214007 ~ 11230837 (+) |
| XLOC_013906 | CR384101.1 | non-coding | upstream | 287672 | 10567371 ~ 10567486 (+) |
| XLOC_013895 | NA | non-coding | upstream | 988436 | 9838182 ~ 9866722 (+) |
| XLOC_013893 | BX927218.1 | non-coding | upstream | 1098142 | 9751075 ~ 9757016 (+) |
| XLOC_013889 | dre-mir-125a-2 | non-coding | upstream | 1411280 | 9443772 ~ 9443878 (+) |
| XLOC_013888 | dre-let-7d-2 | non-coding | upstream | 1425214 | 9429857 ~ 9429944 (+) |
| XLOC_013922 | CU928061.1 | non-coding | downstream | 418719 | 11278413 ~ 11278529 (+) |
| XLOC_013928 | NA | non-coding | downstream | 1435756 | 12295450 ~ 12300891 (+) |
| XLOC_013935 | AL844521.1 | non-coding | downstream | 2085156 | 12944850 ~ 12944966 (+) |
| XLOC_013937 | NA | non-coding | downstream | 2255571 | 13115265 ~ 13115526 (+) |
