XLOC_013928


Basic Information

Item Value
gene id XLOC_013928
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12295450 ~ 12300891 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029877
cagatttttatttatgataTAATCAAAACAGATGCCTGCGTTAATAATACCTACACACACAATGTACAGGTTACCATATAAAAACTACAAAGTGACAAACATTTAGTTTGACAGATAACAGTTGTACAGCATAAAGTGATAGAACACTGTTGGTTTGCCATATATATTTACCTGTGTTTGGCACTTGACCACATGTTGCTGTCTCGTGGGGTTTAGAaatgaagaatatatatatttttaaggagaatttaaaaagcaaaactcATCAGCAGCgattagttttgatttcaagCTCCTTCACAAATTGTTCTAATGGCTTAAATAAATTTGATCATTACAACCTTGACTTCACAGCAACTTCAGTGGAAACCACAGAAAGCTTATAATGGCTACCCATCTTACAAATATGACGTGGTTTGCATGTGAGcgagtgtttgtgtatttatataatggACTACAGATTTGCATGACAGAAAAAAGCATATGCCATCCATTTACACTTGCACGTTCAAACCACTTCTAACCCTGAGGTTGTGCAGAAATAATCGTACACATTAATATCCTACACCCCAATTGCTTCAAAAGTCACCGACAGTATTTCTTTTCAACTCAAGTGCTGGTCAAAATACATGCATAGACAAACACTGAATACACATGAAAAAAGCACCACATACACACATCCTGAAATGTACAGAAAGTACCAGTTAATGAAGAGAATACATTCAGTTTGAGGTGCAGATCCACATGTAGAACGTGCAAAATGATTTAAGCTGTTTCCCATGATATATAAGAATCGGATACCAAGATTTCAATAAGACAAGATTCAGTCAAGCTTCAGCTCCCTATGTCAAACAACATTCACTTCGTCTTAAGGTACAtctaaaatatgtactttttattTGACAGCTGACTGTGTGGGCAGAGCTTTGACTGCATCGGCGTCTAGAAATTATAACAAGCTGAAGGGATTCTGTTGGCTGGTCGATAAGTAAATGGTCTAATGTGAATGTGCATAGAAACGTGTGGTCTTCGCTGTTCATTGTTACAGTCTTAAATAGATATGCGTtcaccaacccaggctcattctgaaaacgtaccattatatacatttctagtctggagagagcaaaatacgtcccagggggTACGTTTATTTGCACTTTTTGATTGTTTTGTCTTCGGGAATCCagcagaggccgctgtgcactCTTTGTCAGATGCcgtttgcgcctgctgttctcacgtattTCCTTTAGAGGCCGctgttgattgactgactgactgactgaccaatcgaccgATTTCCtgccctcccccttccctaaactcaaccaatagtattttaagaagcaccgattgacccgcccatccacttccctaaagccaagcagtgttttgaaaagcaaaccagaaaaaagaaaaaccctcgcctgatttttaccaggttttcagatttgactacattctcaccctcttatttacttgttaattttattttttggcttctgcttttgtcttacgtgctttctggaactgtttttcacCCGACTCGAACTCTGTTGTACATGTCGAGCAATCGGACAAACTGCTAACAGCGGAGATGCCATCCACATGAAGGTGTGGACTCGTCCTCTGGCATTTTCATCACAGAAGATACCATCttgtagatggcctgagga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029877 True 1679 lncRNA 0.39 2 12295450 12300891

Neighbor

gene id symbol gene type direction distance location
XLOC_013927 grhl2b coding upstream 3469 12234975 ~ 12291981 (+)
XLOC_013926 spag1a coding upstream 277004 11984725 ~ 12018446 (+)
XLOC_013925 polr2k coding upstream 313794 11978209 ~ 11981656 (+)
XLOC_013924 adck5 coding upstream 401386 11855330 ~ 11894064 (+)
XLOC_013923 SLC66A2 coding upstream 804901 11432330 ~ 11490549 (+)
XLOC_013929 psmg2 coding downstream 49178 12350069 ~ 12360121 (+)
XLOC_013930 seh1l coding downstream 105692 12406583 ~ 12431988 (+)
XLOC_013931 ldlrad4a coding downstream 144052 12444943 ~ 12622855 (+)
XLOC_013932 rnmt coding downstream 348800 12649691 ~ 12681815 (+)
XLOC_013933 mc5ra coding downstream 461996 12762887 ~ 12803408 (+)
XLOC_013922 CU928061.1 non-coding upstream 1016921 11278413 ~ 11278529 (+)
XLOC_013918 CU628002.1 non-coding upstream 1280592 11013622 ~ 11014858 (+)
XLOC_013906 CR384101.1 non-coding upstream 1727964 10567371 ~ 10567486 (+)
XLOC_013895 NA non-coding upstream 2428728 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 2538434 9751075 ~ 9757016 (+)
XLOC_013935 AL844521.1 non-coding downstream 643959 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 814374 13115265 ~ 13115526 (+)
XLOC_013938 NA non-coding downstream 929492 13230383 ~ 13249249 (+)
XLOC_013942 NA non-coding downstream 1330434 13631325 ~ 13635810 (+)
XLOC_013943 NA non-coding downstream 1495701 13796592 ~ 13805873 (+)

Expression


Co-expression Network