XLOC_013939 (lrp12)


Basic Information

Item Value
gene id XLOC_013939
gene name lrp12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13375838 ~ 13397295 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027841
GGTGGTTTGTGGTGGTAAATACCCGGCTGTAATAACACACAAGCGATCGGAAAGGCCAAAATTGTGCGTGTGGATTTCAGCCAGGAGCAGGCGATCATGCTGGTTGAATAACCATGCAGtagttttattttcagtatttggTTTAGTCAGATTCCGTTAAATGTCTTCATTCTGTAGATCACTGTGTGGCTATATTTGTCTGGATTAGTGCTGTTTAACACCTTTAAACTCTTGGAATTAGCGCTTTCGCGTCGGATCATCGATAGATTAGTGTTGATCTCGTCTCAGGCTTTTAAGgacactgtttgtgtgtgttttacaggaGAAATCGTGAGCTAACAACAAAAGCGCTAGCACAACCGGCTAGTCAAACACTGGTGCCTTTAacgttagctttttttttaaaatctatcaGCAATGGACATCGGAAACGATTTAGCTGTTTTACCTATTAGACACGTTTGCATTTGAACAGTGAGGTTCATTTAATGAATCAATGGGTTTGATATTAGTAGAGTAGATTAGATTAGATGTGTAGGTTGACATTAGCATTAGCTTGTTAGCATTGGCGACTCCTTTGTTGGGAAGACTGGTTGTGGTTTTACTCACTTTGCTTTTTGTTGAGGGAAATTATCGTTTTTATCAAATCCTGTCGGTAATTTTATTGCTTTTTACAGGACTGTCGTTTATCTAAGATGCTTGTTTGTCTGTGACCTAAGTGTTTTTATCAAGATCGTAGTAGAAAAACGAAAGGAAATGTCGAACAGTTAGTGTCTAGTTAATGCTAGTATatttaacaaattacaaatatcgTGTGTAAATAACGACACTAGAGCTATTAGTTATCGTTTAAAGCTATTATGGCTCACACGTTGAGTTTAAACCGGATCTATTTGCTATGGACACATCTACTCTTCATTGTTATGGGAAATGCAGTTTCATCGCAGCACAGCGAGAACGTATATGTATCAGGGATGTCAAATGCCTGTGGAGATGTGGCAGAGCAGATAAGGGCATCCAGTGGAGTGATAACCAGCCCTGGTTGGCCCTTTGAATACCCATCTCGCATCAACTGCAGCTGGAACATCAGGGCCAACCCTGGAGAGATTATTACCATCAGTTTTCAGGACTTTGAGATTCAAAGTTCACACCGATGTGGTTTAGACTGGATCTCCATTGGAACCTATAAAAACCTGGATGGATACCGAGCCTGCGGCTCATCTATTCCGGCACCATACATCTCCTCTcaggatcacgtgtggattaagtTCCACTCTGATGATAGCATGACTGGAAAGGGCTTCAGGCTCTCTTACGTAACAGGGAAATCAGAAGAAGCCAGCTGCAAACCTGACCAATTTCACTGCGCCAATGGGAAATGTATCCCGGAGTCATGGAAGTGCAACACTATGGATGAATGTGGCGATAACTCGGACGAGGAGTTATGCGTACAGCCAAATCCCTCTGCGTTCTTCTCTTTCCAGCCCTGTGCCTTCAACCAGTTTCCTTGTCTTTCACGTTACACCCGTGTTTACACCTGCCTGCCAGAGTCTCTTAAATGTGATGGCAGTATTGATTGCCAGGACTTGGGTGATGAGATCGATTGTGACGTGCCCACCTGTGGTGAATGGCTCCGCAATTTCTACGGTACTTTCAGCTCACCCAACTATCCTGACTTCTATCCACCTGGCAGTAACTGCACATGGCTGATCGACACTGGTGACCACCGAAAGGTTATCTTGCGCTTTATGGACTTTAAACTTGATGGTACAGGCTATGGCGATTACGTTAAAGTCTACGACGGACTAGAGGAGAACCCCAGACGCCTATTGCGTGTGTTGACTGCATTCGACTCTCGAGCCCCTGTAGCGGTGGTGTCCTCTTCAGGACAGCTTCGGATACACTTTTACGCTGACAAAATCAATGCGGCTCGAGGCTTTAATGTTACGTATCAAGTAGATGGTTTTTGCCTGCCATGGGAAATCCCATGTGGAGGAAACTGGGGTTGCTACACTGAGCAACAGCGCTGTGATGGCTACTGGCATTGTCCCAATGGCAGGGATGAGCTCAACTGCAGTAACTGCCAAGAAGACGAGTTCCCATGCTCAAGAAACGGTGCCTGCTACCCACGCTCTGACCGGTGCAACTACCAGAACCGCTGCCCAAATGGCTCTGATGAGAAGAACTGCTTTTTCTGCCAACCTGGAAATTTCCACTGCAAGAACAACCGCTGTGTTTTTGAAAGCTGGGTATGTGACGCGCAAGACGACTGTGGGGATGGAAGCGATGAGGAGAGCTGCCCGGTAATTGTACCCACAAGAGTCATCACTGCTGCTGTAATTGGGAGTTTGATCTGTGGTCTGCTGTTGGTCATTGCTTTGGGCTGCACCTGCAAACTGTACTCGCTTCGAATGTTTGAGCGCAGGTCATTTGAGACTCAGCTCTCTAGAGTGGAAGCAGAATTACTGAGAAGAGAAGCTCCGCCGTCGTATGGGCAGCTGATTGCTCAAGGACTGATCCCCCCAGTGGAAGATTTTCCTGTCTGCTCTGGAAATCAGGCTTCTGTTTTGGAAAATCTAAGATTGGCAGTTCGTTCCCAGCTGGGATTCACCTCAATCCGACTTCCAACCACAGGTCGTCACGGCAACATCTGGAGACGTCTGTTCAATTTCACACGTTCACGGCGATCTGGTTCTCTTGCACTGGTATCTGCAGACACTGAAGAAGGCCTTACAGGCAATGCCTCAGCTCGTGAGCCAGAGAGACTTGGCTCTCACCGGGGACTGTTGCCCTTGGACTCAGATGACACTGACACTGAGAGCGACCACCATTCCCGCAGGGATGTTCCTGGAGCTGTTGGAGGCCTGATGGCACCACTGCCACAGAAAACTCCCCCTACAACAGCTGTGGAAGCCATCGTCTCAGTGTCTGCCAGCTCTGCTCCACTGGTCAGCCGGGAGAGCagcatctctgaaagcatctCTGAAAGTTCTGGAGTAACTGGACCTTCGTGTGCTACTACTAATTCTAGTACTTCTGCAAGGAGCCCCTTCGTCAGTGCTCTAAACCGGGTCACCCGCAGCCTGCGCTGGATTCGTTTCTCATTAGGGCGAGCTGGTGATGGAGGGACCACTGGCATCGAACAGAATCACAGCCCATTGCGGCAGCTAGAGCAAGGTAGTGCGGGGTGCACTGGTGTCATTAGGGGAGAGGACGAAGATGATGTGGAGCTCCTCATTCCCGTGTCAGAGGCCGGTTCCCTGGACAGTGATGAGAGCTCCAGGCCCCTACTGGAACAAGGTCTGGAGCAGGTCTTTGGCCCACATCTTGCTCCGGCTGCCGTCTCTCTCAGAGGACAACTGGGGGTTCGGGACGGCCCCTGTGAACACTGTGGAATTGTCCATACAGCGCGAATCCCGGACGCTTGTCTGGAGGCAACAGCAAAAACAGAAACTAGTGATGATGATTCTTTGCTGCTCTGTTAAGACTTAGAGGAACTCCCTGACTCAGTACGTGACCCATATGAAATGCCCCTGCTCACAGCTTGCCATTTTTGTTATCGCCTCCTAGTGGAGCGGAGGTTGAATGTTTTTAGACGCGTCTCCTTTTTACAAAAAGGAAGAGCTTCGGAAATCAGGTACTTTTAAAGACCAGTCCGTAAAAATCATACGGAGTACGAGAGCTCCCCAATCCCACTGTTCCTTCCACTGTGCAATATTAGTATTCGTTGAGATGTTTACCAGGTCAAAGTCTATTTTTCTGGAGTCAAATTAAGCTCACAAAGTGTAAAGTGTGAGCCGCTCTGCAGATCTCGGAATGGGAAAGCAGCACAAACAAATGCATCTGCCCTGGACAATGTGGAACGGTGAATGACTGAACACACACTGGAAGGCTCTGAGAGATTTGTTACTTAACCTTTAATTTATTTCTACTTCTGATGTCCGATATTTGTCTTTTTAAAAGAACCATTGCCCCAAAAATGAAATGTCTACATACCCTCATATTGTTCCAGacacacttttacattttttttattaatttatttacttttattggtGATCCCTCAGCTCTTTTCTATAAAGTGAGAGTTAATGAGACTGTGCCATCAAGCATAAAAAGGATGCACACATGCTATAATCAAGTTAAATTGTTAGATCGTGATTAATAAGTTGCTATTTCTGGTTGGCAAGTTATACATTTTCCTTCCATATACATTTGTATtgtatggagaaaaaaaaacatttgtaagcagtaaaaaaaaaaaaattctctcaaaTCAAATCGAGGTCTTATTTCAACAGAGGGAAGTCTTATCGGTTTGGAACCATTGAGTGAATGATAGAAATTTCATTTTGGGTTAAATTGTTCTTTAAACTGCTTGCAAAAAAATTGGGAGAATTGGTACATTTGTTCATTTGAGTGCAAGTTTTGGTCCCTGCTGCAGTGGTACTAGTTGTGTGACTTGCGATTATGCGTGAGGGATGTTTATTTATAACAGATTCTAATCTGAGAGGGAGTGACTATTTTTCAAGGATGTTGCATTGTATAACAGCCACTTctgtttgttgtatttatttttgttaccgTTAACCTTTTGGTAACATTACTGTTTTGGTACTGAGAATtcttgtgtgagtgtgtatatttattattgttttttttttttcttctccatttCAATAGCGTTTACTTGAAAAGCA

Function

symbol description
lrp12 Orthologous to human LRP12 (LDL receptor related protein 12).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-399 Orthologous to human LRP12 (LDL receptor related protein 12).

Ensembl:

ensembl_id ENSDARG00000098845

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027841 True 4700 mRNA 0.45 7 13375838 13397295

Neighbor

gene id symbol gene type direction distance location
XLOC_013938 NA coding upstream 126589 13230383 ~ 13249249 (+)
XLOC_013936 rims2b coding upstream 189016 13099541 ~ 13186822 (+)
XLOC_013937 NA coding upstream 260312 13115265 ~ 13115526 (+)
XLOC_013935 AL844521.1 coding upstream 430872 12944850 ~ 12944966 (+)
XLOC_013934 cthrc1a coding upstream 448749 12915498 ~ 12927089 (+)
XLOC_013940 srsf4 coding downstream 13608 13410903 ~ 13420490 (+)
XLOC_013941 tmem200b coding downstream 23589 13420884 ~ 13426991 (+)
XLOC_013942 NA coding downstream 234030 13631325 ~ 13635810 (+)
XLOC_013943 NA coding downstream 399297 13796592 ~ 13805873 (+)
XLOC_013944 BX530067.1 coding downstream 436584 13833879 ~ 13833993 (+)
XLOC_013928 NA non-coding upstream 1074947 12295450 ~ 12300891 (+)
XLOC_013922 CU928061.1 non-coding upstream 2097309 11278413 ~ 11278529 (+)
XLOC_013953 NA non-coding downstream 1453522 14850817 ~ 14871231 (+)
XLOC_013955 NA non-coding downstream 1628621 15025916 ~ 15027342 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_00935826_00945755 LRP12 coding CI01000320 null 934432 ~ 945755 (-)