XLOC_013947 (zgc:175136)


Basic Information

Item Value
gene id XLOC_013947
gene name zgc:175136
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14109348 ~ 14112967 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027850
GCTGAAAGCTGAAGTGAGGGCATCATAAAAGAAGCTGCTGCTCACTTGGTTTTTGTGGGTGTCTTAACAATGGGTTCTGGATTCTGTTCAATATTTCTTTTTGCCTTGTTTCCTGCTTATGTAACCTGTTGGGGGAATTATGAAGGAAGCATGCCAGATGGTGATGTTCAAAGATTTTTAACACCTACCTTACCAGTGATTGGTTCTGAGGTGAAACAAAAGGCAATTTGGAATGAACTTTCCTATGGTTCTGTTCGTCAGCCATATTATCGAGGCACCCATGAAAGTTATGATGCCAAAGGAAGTTTGTTTGTGGGCTCAAATGCTAAATCATACACAAAAGACTGTCAGGCTCCAGCTAAAAGTGGCAATCGAGAAAATATgatgaattttaattctaattcaCTATCAAAATATGGTGGCTCAAGTTGTGGTCAACCCTCTACTCAATATGAGTCTCGTACAGATACTAATTCCCTCAAAAATGTCCAGGTTGGTAGCCGACTTGCTTCAGCCTTGTCTCAAAGTGGGCCCACATTGAGAAAAACCTTGAAAGTACCTGAATTGAGTAGTTTAAAAATCTCTAGAGGTGAATCTAGTTATGGGGCAGGTCAGAGTATTAACAATGTCCAGATAGCCAGTAACAGTTTTGGCCCACTGCTGAAAGGATCGCCTGTGCAATCAAATATAAATCCAGGAAAACTCTCTCAGGGTGGACCTTCAGTTGTTAGTTCGGGACCAGTCTTTGTAGTTCAAGATAAAGAGAGTGCCCAAGGTCAAAATGGCTTTCCAGATTATGGAAAACCGCCTGTTCATAGACTCATTAAACCCTACAAGGGCAGTCAGACCTCTAGAGATGGTAGCTTGTCTGCTAGCAGTCTGGGAAAGGCATGGAAAAAGACACTTCAATACTCCAAGAGTGGAACTCAATACAATCTCGACACAGAGTTAAGAAAACCTTCCAAAAATGATTGCAAAGACAATCCTGCTGAGTCAATTGCCAGCTCTGGTGAGGTTCTTCGAAAGACCCAAGAAAGTGCACTGAGAAACATGTTGCCGCCTCGTTATGAAGCAACTATTCCCAAATTTCAGCAAGTTCACAACAGTCGTGGACAATCAAATCAAATGTTTAAACCCATGTACCCCCCTCAAAATGGGGCTCAACAGAATGTTGGTAGAAAGTCCACAACTGCCAGTTCTGGGTTGATCCTGGTTCAGCAGGCTCCTACAGATGCTCTGAGTGGGAAAGAATCCAATAATCGTAATGTGTATCCTAGTTTTTCAGAGCGTGAAGTAGCATTTGCCTCTGGCCAGACTTCTCATCAATACCAACCTTTCAAAGTGACCCAGAATTCCAGAAATGCCCAGCCAGCCACTGACTCTTATGGTAGCTCTTCTAAGACTGGATATCAGACCTTCTCTTCTTTAAAGGGAACTTCATACAAACCAAGTTCAGGCTCCTCAAAGTCCTCTACAAGTGTGTTCAGTGCCACCAACCCCAATTTTGCTGAACCTAATGAGATTAACACGGTCCATGTAAGGCCTAACAAACCATTTGCAAGCAGCTTTGGTCAAGTACAGAGCCAAAGGGCTTCTGGTGACATTAGCAGAGGTGCTTATCAAAGTTCCTTACCTTCCAGTTACATGGGTCTAATGCCTAGTAAGGAGGTACAAATATCTGCTAGTTCCTCAGCTCAATTTTATGGTTCTAGAAACCAGAACCAACTTGTTGAAACTCAAGAAGACACAGATGATATCAGATGCATTACAACCATTCCAAGTGAATTTGGCCAAGGTGCCATTCGAAGACTTTCTCCTAAGCTTTCCAGCAAATACAGACGAGTTAAACAAAATGGACAAGAAAGACTGGATTTTGTAGCCCCAAAATGTTATTCTAGTCTTGGTCAAAAGGGCTCAGTCAATTTCCAGGAAGTGAACCGGTCTGTCTAAAAGCACTTCAACGTCTGCCATAATCCTTGCCTGGGTGTGCATTGGGGAGGCATTCAGTCATCAGGCTCAGGTCTCTGCAAGGACTAGGATGCTGTGACTGATCCAGTGCTGAGCATTTCAGTGATTTGTTGAAACCGTGGACACAGGGGATGGTCCTGGCAATGTATGATTCTTCTATGTAAAACCCTttaataaaacatcaaatgtttcaaaacaaa
>TCONS_00027851
CTTTGTTTGCTTTCAGATTTCTTTTTGCCTTGTTTCCTGCTTATGTAACCTGTTGGGGGAATTATGAAGGAAGCATGCCAGATGGTGATGTTCAAAGATTTTTAACACCTACCTTACCAGTGATTGGTTCTGAGGTGAAACAAAAGGCAATTTGGAATGAACTTTCCTATGGTTCTGTTCGTCAGCCATATTATCGAGGCACCCATGAAAGTTATGATGCCAAAGGAAGTTTGTTTGTGGGCTCAAATGCTAAATCATACACAAAAGACTGTCAGGCTCCAGCTAAAAGTGGCAATCGAGAAAATATgatgaattttaattctaattcaCTATCAAAATATGGTGGCTCAAGTTGTGGTCAACCCTCTACTCAATATGAGTCTCGTACAGATACTAATTCCCTCAAAAATGTCCAGGTTGGTAGCCGACTTGCTTCAGCCTTGTCTCAAAGTGGGCCCACATTGAGAAAAACCTTGAAAGTACCTGAATTGAGTAGTTTAAAAATCTCTAGAGGTGAATCTAGTTATGGGGCA
>TCONS_00027852
TACAAGTGTGTTCAGTGCCACCAACCCCAATTTTGCTGAACCTAATGAGATTAACACGGTCCATGTAAGGCCTAACAAACCATTTGCAAGCAGCTTTGGTCAAGTACAGAGCCAAAGGGCTTCTGGTGACATTAGCAGAGAAACCAGAACCAACTTGTTGAAACTCAAGAAGACACAGATGATATCAGATGCATTACAACCATTCCAAGTGAATTTGGCCAAGGTGCCATTCGAAGACTTTCTCCTAAGCTTTCCAGCAAATACAGACGAGTTAAACAAAATGGACAAGAAAGACTGGATTTTGTAGCCCCAAAATGTTATTCTAGTCTTGGTCAAAAGGGCTCAGTCAATTTCCAGGAAGTGAACCGGTCTGTCTAAAAGCACTTCAACGTCTGCCATAATCCTTGCCTGGGTGTGCATTGGGGAGGCATTCAGTCATCAGGCTCAGGTCTCTGCAAGGACTAGGATGCTGTGACTGATCCAGTGCTGAGCATTTCAGTGATTTGTTGAAACCGTGGACACAGGGGATGGTCCTGGC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-122 No description available

Ensembl:

ensembl_id ENSDARG00000103024

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027850 False 2168 mRNA 0.43 5 14109348 14112967
TCONS_00027851 False 533 lncRNA 0.40 2 14109501 14110107
TCONS_00027852 True 538 processed_transcript 0.45 4 14110971 14112909

Neighbor

gene id symbol gene type direction distance location
XLOC_013946 tpbga coding upstream 47361 14059349 ~ 14061987 (+)
XLOC_013945 tmem222b coding upstream 73456 13994563 ~ 14035892 (+)
XLOC_013944 BX530067.1 coding upstream 275355 13833879 ~ 13833993 (+)
XLOC_013943 NA coding upstream 303475 13796592 ~ 13805873 (+)
XLOC_013942 NA coding upstream 473538 13631325 ~ 13635810 (+)
XLOC_013948 kdf1b coding downstream 919 14113886 ~ 14127134 (+)
XLOC_013949 nudc coding downstream 45108 14158075 ~ 14169457 (+)
XLOC_013950 arid1ab coding downstream 238593 14351560 ~ 14438821 (+)
XLOC_013951 zdhhc18b coding downstream 341339 14454306 ~ 14470811 (+)
XLOC_013952 tent5bb coding downstream 461031 14573998 ~ 14588414 (+)
XLOC_013938 NA non-coding upstream 860099 13230383 ~ 13249249 (+)
XLOC_013937 NA non-coding upstream 993822 13115265 ~ 13115526 (+)
XLOC_013953 NA non-coding downstream 737850 14850817 ~ 14871231 (+)
XLOC_013955 NA non-coding downstream 912949 15025916 ~ 15027342 (+)
XLOC_013956 NA non-coding downstream 1188721 15301688 ~ 15303833 (+)
XLOC_013963 snrnau11 non-coding downstream 1948859 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 1956003 16068970 ~ 16069103 (+)

Expression


Co-expression Network